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Stockholm - #2

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xyanqian wants to merge 18 commits into

Open

Stockholm#2
xyanqian wants to merge 18 commits into
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stockholm

Commits on Nov 3, 2017
- allow manual input of tile position in case of corrupted metadata
  xyanqian
  committed
  2f3f2fe
- save raw multidimensional intensity data and so-called good spots
  xyanqian
  committed
  0c14add
- added missing function bi
  xyanqian
  committed
  0bb387d
- other minor changes regarding variable savign and so on
  xyanqian
  committed
  eb2ab41
- changes in quality_threshold reverted
  xyanqian
  committed
  604ae3f
Commits on Nov 6, 2017
- make legened visible
  xyanqian
  committed
  964069b
Commits on Nov 20, 2017
- merge duplicates in legend
  xyanqian
  committed
  ef45b40
- when general stain is the last channel in imaging
  xyanqian
  committed
  8afd170
Commits on Nov 28, 2017
- bug fix: transform spot coordinates before comparing them with cell label map; changed the default cell class visualization options
  xyanqian
  committed
  a9c0584
Commits on Jan 17, 2018
- just a minor change in legend (R2017 automatically updates legend)
  xyanqian
  committed
  d1bf2bf
Commits on Jan 30, 2018
Commits on Feb 12, 2018
- max intensity calling updated
  xyanqian
  committed
  2827cb0
Commits on Mar 21, 2018
- ca1 pie color
  xyanqian
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  40f464d
- adjust legend in pie plot
  xyanqian
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  f953aaa
Commits on Apr 6, 2018
- pie plots with white background
  xyanqian
  committed
  8792fa6