Skip to content

properly integrate gquad #61

Description

@sjanssen2

open TODOs for #60

  • define covariance for gquads in Algebras/alg_ali_purecovar.gap, Algebras/Probing/Parts/algpart_probing_gquad.gap
  • define hi_shape definitions in Algebras/Shapes/alg_ali_hishapes.gap and Algebras/Shapes/alg_hishapes.gap
  • check against RNAfold how probing parameters get applied to gquads in Algebras/Probing/Parts/algpart_probing_gquad.gap
  • how could gquads be integrated into macrostate pfunc computation? Algebras/Pfunc/alg_pfunc_macrostate.gap. gquad are not yet added to the macrostate grammar, probably for good
  • we might want to allow several mismatches for onlychar in alifold.hh and have this ratio as a parameter?!

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions