changes - #16

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jizongFox wants to merge 65 commits into

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Commits on Oct 4, 2021

[pre-commit.ci] pre-commit suggestions
pre-commit-ci[bot]
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d770ccb

Commits on Oct 22, 2021

adding sequence of keywords in order to make image and segmentation to share different parameters
jizong
committed
fc7e7c8
improved resizeNaive and its children to accept a list of parameters
jizong
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46a3370
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed
4b7d672
Merge pull request #1 from jizongFox/feature/medical_segmentation
Jizong's Fox
authored
a3cf253

Commits on Oct 24, 2021

resolved partially imported errors by extracting ntuples to utils folder.
jizong
committed
cb7ac6e
Merge branch 'master' into feature/medical_segmentation
Jizong's Fox
authored
a0f8aa5
Merge pull request #3 from jizongFox/feature/medical_segmentation
Jizong's Fox
authored
1b089af
adding constant parameter in order to simplify the parameter assignment
Jizong@ETS
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0719259
adding sitk transformation
jizong
committed
d819df4
adding sitk2tensor, and percentiels normalization.
jizong
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83e3105
rename sitk and fixed some minor bugs
jizong-ETS
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3cd60e1
adding documents on affineBase and improve the loader
jizong
committed
d6ae69c
adding samplebasedCompose
jizong
committed
a06a1e4

Commits on Oct 25, 2021

Adding dimension insertion to sitkto tensor
jizong
committed
f78abec
adding grid transform
jizong
committed
28718c7

Commits on Oct 27, 2021

adding grid transform based on gird_transform_branch
jizong
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f9b71cd
Merge branch 'master' into features/sitk_transform
jizong
committed
f067031
corrected imports
jizong
committed
debecfe
Merge pull request #123 from PhoenixDL/pre-commit-ci-update-config
justusschock
authored
437f891

Commits on Oct 28, 2021

remove samplecompose and mark itk transform so that it cannot be shuffled
jizong
committed
1e2dd67
Merge pull request #7 from jizongFox/features/sitk_transform
Jizong's Fox
authored
cfa2448

Commits on Oct 29, 2021

adding padding as a feature. fixed a bug on percentile normalization, and fixed a bug on Random Crop transformation
jizong
committed
3210713
Merge pull request #9 from jizongFox/bugfix/padding
Jizong's Fox
committed
5db6fa8

Commits on Oct 30, 2021

fixed some minor bugs on kernel transformation and affine transformation
jizong
committed
9050e42
Merge branch 'PhoenixDL:master' into master
Jizong's Fox
authored
657f172
Update README.md
Jizong's Fox
authored
74c7827

Commits on Nov 2, 2021

bug fixed: Oneof api has no attibute keys
yuxiang
committed
eb0d17c
Merge pull request #11 from Yuxiang1990/dev
Jizong's Fox
authored
ee2cf74
Update README.md
Jizong's Fox
authored
db7b533
Update README.md
Jizong's Fox
authored
1d03064

Commits on Nov 6, 2021

fixed a bug on one of
jizong
committed
a443b75

Commits on Nov 8, 2021

refactorizing data augmentition abstract class and then rewrite spatial transforms.
jizong
committed
6b3a790

Commits on Nov 9, 2021

reformulaze the intensity section.
jizong
committed
6b75c4f

Commits on Nov 19, 2021

make affine working
jizong
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a4edc5b
making rotation working
jizong
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c6032da

Commits on Nov 24, 2021

tested on a toy example.
jizong
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0f59885
remove kwargs
jizong
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e46eb2b
rename generic typing
jizong
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8984f44
adding Rician Noise Transform
jizong
committed
fbeda0a
Merge pull request #13 from jizongFox/feature/per_sample
Jizong's Fox
authored
c09a456
putting enum to constants file
jizong
committed
302a3ef
fixed typing errors on crop
jizong
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e98de23

Commits on Nov 25, 2021

fixed affine transformation and making the demo working
jizong
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b25d72c
adding batchviewer from nnUnet
jizong
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c6a4844
enhanced riciannoise by adding keep_range parameter
jizong
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6899fd1
improved kernel transform
jizong
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c811311
adding a working sample for demo
jizong
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82720fb
adding a working sample on acdc dataset
jizong
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9d80fa2

Commits on Nov 26, 2021

Merge pull request #14 from jizongFox/dev
Jizong's Fox
authored
ce075e5
adding acdc dataset example for readme
jizong
committed
e34125b

Commits on Nov 29, 2021

fixed bugs on affine based transformation
jizong
committed
bf70e2a

Commits on Dec 20, 2021

Update README.md
justusschock
authored
b44b2c4
Create CITATION.cff
justusschock
authored
1fccc3a
Update CITATION.cff
justusschock
authored
6de1933

Commits on Dec 25, 2021

Merge pull request #15 from PhoenixDL/master
Jizong's Fox
authored
62d7c1b

Commits on Apr 15, 2022

fixed import error for python==3.7
jizong
committed
982aeef
fixed sitk function
jizong
committed
e88ffd5
changed np.float32 to float
jizong
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55f3852
rename type_item_seq to ItemSeq
jizong
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8b42294

Commits on Apr 22, 2022

adding default collate to automatic gpu compose
jizong
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ed00bfa
adding resize centre crop
jizong
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f75f6a5
make abstract parameter to be associated with torch.nn.Module.
jizong
committed
86cb965

Commits on Apr 23, 2022

adding pad-center-crop
jizong
committed
4e6a8c6

Commits on May 12, 2022

refactorize random module
jizong
committed
85adc35