hmftools

Various utility tools for working with genomics data

JARs used by HMF pipeline can be downloaded from https://resources.hartwigmedicalfoundation.nl

Name		Name	Last commit message	Last commit date
Latest commit History 5,584 Commits
actionability-vs-soc		actionability-vs-soc
amber		amber
api-clients		api-clients
bachelor-pp		bachelor-pp
bachelor		bachelor
bam-slicer		bam-slicer
count-bam-lines		count-bam-lines
ensembl-db		ensembl-db
fastq-stats		fastq-stats
health-checker		health-checker
hmf-common		hmf-common
hmf-extensions		hmf-extensions
hmf-gene-panel-builder		hmf-gene-panel-builder
hmf-id-generator		hmf-id-generator
knowledgebase-importer		knowledgebase-importer
patient-db		patient-db
patient-reporter		patient-reporter
portal-data-converter		portal-data-converter
purity-ploidy-estimator		purity-ploidy-estimator
sage		sage
sig_analyser		sig_analyser
strelka-post-process		strelka-post-process
sv-analyser		sv-analyser
sv-graphs		sv-graphs
sv-visualiser		sv-visualiser
variant-annotator		variant-annotator
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
hmf_code_scheme.xml		hmf_code_scheme.xml
pom.xml		pom.xml

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