Skip to content

Handle kreports with no root line - #71

Open
schorlton wants to merge 1 commit into
jenniferlu717:masterfrom
schorlton:sam/handleNoRoot
Open

Handle kreports with no root line#71
schorlton wants to merge 1 commit into
jenniferlu717:masterfrom
schorlton:sam/handleNoRoot

Conversation

@schorlton

Copy link
Copy Markdown

Kraken2 outputs kraken reports without a "Root" line if all reads are unclassified. I have not tested the other Kraken versions.

This fixes an error where the tree is uninitialized because the first kreport file passed to combine_kreports.py contains only unclassified reads.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant