Understanding pipelines and protocol analysis on RNA-seq bulk data.
- FastQC (Win/Linux zip file) https://www.bioinformatics.babraham.ac.uk/projects/download.html#fastqc
- Trimmomatic (binary) http://www.usadellab.org/cms/?page=trimmomatic
- HISAT2 & GRCh38 https://daehwankimlab.github.io/hisat2/download/
- samtools https://github.com/samtools/samtools/releases/download/1.19/samtools-1.19.tar.bz2
- featureCounts https://sourceforge.net/projects/subread/files/subread-2.0.6/
- Ensembl's hg38 https://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz