jang1563 · jang1563 · Jun 5, 2026 · Jun 5, 2026
diff --git a/.github/workflows/regression-tests.yml b/.github/workflows/regression-tests.yml
@@ -12,10 +12,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: "3.11"
           cache: pip

diff --git a/.zenodo.json b/.zenodo.json
@@ -1,12 +1,12 @@
 {
   "title": "GeneLab Benchmark: A Multi-Tissue Spaceflight Transcriptomics Benchmark for AI/ML Models",
   "upload_type": "software",
-  "version": "7.1.0",
-  "description": "GeneLab Benchmark provides standardized mission-held-out benchmark tasks for evaluating machine learning and foundation-model behavior on public NASA OSDR mouse spaceflight transcriptomics data. This archive metadata describes the v7.1 public documentation and release-candidate surface. v7.1 is a documentation and public metadata consistency patch and does not introduce new benchmark result generation.",
+  "version": "7.1.1",
+  "description": "GeneLab Benchmark provides standardized mission-held-out benchmark tasks for evaluating machine learning and foundation-model behavior on public NASA OSDR mouse spaceflight transcriptomics data. This archive metadata describes the current public documentation, card-pack, and release-candidate surface. v7.1.1 is a documentation, public-card, and metadata consistency patch and does not introduce new benchmark result generation.",
   "creators": [
     {
-      "name": "Kang, Jaeyoung",
-      "affiliation": "Cornell University"
+      "name": "Kim, Jihoon",
+      "affiliation": "Weill Cornell Medicine"
     }
   ],
   "access_right": "open",
@@ -40,5 +40,5 @@
       "scheme": "url"
     }
   ],
-  "notes": "Source biological data are derived from NASA OSDR public datasets and should be cited at the individual OSDR study level where applicable. This repository archive is not a clinical, crew-health, countermeasure, or intervention recommendation artifact. Final DOI publication should confirm author order, manuscript title, release tag, and upstream dataset citation metadata before deposition."
+  "notes": "Source biological data are derived from NASA OSDR public datasets and should be cited at the individual OSDR study level where applicable. This repository archive is not a clinical, crew-health, countermeasure, or intervention recommendation artifact. Final DOI publication should confirm the final manuscript author list, manuscript title, release tag, archive checksum, and upstream dataset citation metadata before deposition."
 }
diff --git a/CITATION.cff b/CITATION.cff
@@ -3,8 +3,8 @@ message: "If you use this benchmark in your research, please cite as below."
 type: software
 
 title: "GeneLab Benchmark: A Multi-Tissue Spaceflight Transcriptomics Benchmark for AI/ML Models"
-version: "7.1.0"
-date-released: "2026-05-09"
+version: "7.1.1"
+date-released: "2026-06-05"
 
 abstract: >
   GeneLab Benchmark is a comprehensive benchmark for evaluating AI and machine learning
@@ -17,14 +17,14 @@ abstract: >
   (mouse, Drosophila), spatial transcriptomics (Visium), and single-cell RNA-seq
   (RRRM-1, RRRM-2). The v7 release also includes unified scPRINT2 and graph
   neural network benchmarking, plus cross-method synthesis across classical,
-  foundation-model, and graph-based approaches. The v7.1 release is a
-  documentation and public metadata consistency patch; it does not introduce
-  new benchmark result generation.
+  foundation-model, and graph-based approaches. The v7.1.1 release is a
+  documentation, public-card, and metadata consistency patch; it does not
+  introduce new benchmark result generation.
 
 authors:
   - family-names: "Kim"
-    given-names: "JangKeun"
-    affiliation: "Cornell University"
+    given-names: "Jihoon"
+    affiliation: "Weill Cornell Medicine"
 
 repository-code: "https://github.com/jang1563/GeneLab_benchmark"
 url: "https://github.com/jang1563/GeneLab_benchmark"
@@ -68,8 +68,8 @@ preferred-citation:
   title: "GeneLab Benchmark: A Multi-Tissue Spaceflight Transcriptomics Benchmark for AI/ML Models"
   authors:
     - family-names: "Kim"
-      given-names: "JangKeun"
-      affiliation: "Cornell University"
+      given-names: "Jihoon"
+      affiliation: "Weill Cornell Medicine"
   status: "in-preparation"
   year: 2026
-  notes: "Manuscript in preparation; v7.1 documentation consistency patch."
+  notes: "Manuscript in preparation; v7.1.1 documentation, public-card, and metadata consistency patch."
diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2026 Jaeyoung Kang
+Copyright (c) 2026 Jihoon Kim
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/README.md b/README.md
@@ -16,6 +16,11 @@ defines paper-archive scope. [`docs/RELEASE_ARCHIVE_MANIFEST.md`](docs/RELEASE_A
 and [`docs/RELEASE_ARCHIVE_CHECKLIST.md`](docs/RELEASE_ARCHIVE_CHECKLIST.md)
 track Zenodo metadata readiness and final DOI/tag gates.
 
+Archive note: the existing `v7.1` GitHub release predates this public card and
+archive-metadata polish. Use `v3` for the current detailed evidence surface and
+`main` for the portfolio-facing entry point until the next DOI-oriented patch
+tag is minted.
+
 Branch note: `v3` is the canonical evidence branch for detailed v9
 metadata-alpha artifacts. The default `main` branch mirrors the portfolio-facing
 card surface for first-time readers.
@@ -415,10 +420,10 @@ Key methodological choices underpinning this benchmark:
 ```bibtex
 @dataset{kim2026genelab,
   title   = {GeneLab Benchmark: A Multi-Tissue Spaceflight Transcriptomics Benchmark for AI/ML Models},
-  author  = {Kim, JangKeun},
+  author  = {Kim, Jihoon},
   year    = {2026},
   url     = {https://huggingface.co/datasets/jang1563/genelab-benchmark},
-  note    = {v7.0 with v7.1 documentation consistency patch; data freeze 2026-03-01}
+  note    = {v7.0 with v7.1.1 documentation, public-card, and metadata consistency patch; data freeze 2026-03-01}
 }
 ```
 

diff --git a/docs/RELEASE_ARCHIVE_CARD.md b/docs/RELEASE_ARCHIVE_CARD.md
@@ -2,7 +2,7 @@
 title: GeneLab Benchmark Release Archive Card
 page_type: release_archive_card
 status: release_candidate_metadata_ready
-last_reviewed: 2026-06-04
+last_reviewed: 2026-06-05
 claim_boundary: archive_metadata_no_new_result_or_payload_claim
 ---
 
@@ -20,13 +20,13 @@ It does not create a DOI, approve a new result release, or freeze v9 payloads.
 
 | Field | Current value |
 |---|---|
-| Release candidate | v7.1 public documentation and card-pack surface |
+| Release candidate | Current `main` public documentation and card-pack surface |
 | Repository branch | `main` as public entry point; `v3` as detailed v9 evidence branch |
 | Current result boundary | v1-v7 canonical historical benchmark surface |
-| Documentation patch | v7.1 consistency patch, no new result generation |
+| Documentation patch | v7.1.1 metadata/card consistency patch, no new result generation |
 | Dataset payload boundary | HF feature-matrix package plus GitHub task/evaluation metadata |
 | DOI status | Not minted in this card |
-| Archive status | Release-candidate metadata ready; final tag/DOI still pending |
+| Archive status | Release-candidate metadata ready; next DOI-oriented tag, checksum, and DOI still pending |
 
 ## Archive Contents
 
@@ -57,9 +57,11 @@ The archive candidate should not claim to include:
 
 Before a DOI-oriented release:
 
-- Confirm author order, affiliations, and manuscript title in `CITATION.cff`
-  and `.zenodo.json`.
-- Create an annotated GitHub release tag from the final commit.
+- Confirm the final manuscript author list, affiliations, and manuscript title
+  in `CITATION.cff` and `.zenodo.json`.
+- Create an annotated GitHub release tag from a final commit that includes the
+  public card and release-archive metadata polish. The existing `v7.1` tag
+  predates these files.
 - Generate and store a checksum for the release source archive.
 - Confirm the Hugging Face dataset card links to the intended canonical branch
   and release tag.
@@ -75,10 +77,10 @@ Before a DOI-oriented release:
 | Gate | Status | Note |
 |---|---|---|
 | Public README entry point | Pass | Links card pack and portfolio brief |
-| Citation metadata | Partial pass | `CITATION.cff` exists; author/title review still needed |
+| Citation metadata | Pass for current public identity | `CITATION.cff` exists; final manuscript author list/title review still needed |
 | Zenodo metadata | Candidate ready | `.zenodo.json` added for DOI deposition |
 | License | Pass for code | MIT license present |
-| HF dataset card | Pass | Links transparency cards on canonical `v3` |
+| HF dataset card | Pass | Links transparency cards on current public `main` |
 | Claim-boundary cards | Pass | System, evaluation, readiness, and claim cards are public-review ready |
 | Release archive manifest | Pass | `docs/RELEASE_ARCHIVE_MANIFEST.md` added |
 | Source archive checksum | Pending final tag | Generate after final GitHub release tag |

diff --git a/docs/RELEASE_ARCHIVE_CHECKLIST.md b/docs/RELEASE_ARCHIVE_CHECKLIST.md
@@ -2,7 +2,7 @@
 title: GeneLab Benchmark Release Archive Checklist
 page_type: release_archive_checklist
 status: release_candidate_checklist
-last_reviewed: 2026-06-04
+last_reviewed: 2026-06-05
 claim_boundary: checklist_no_new_release_or_doi_claim
 ---
 
@@ -17,8 +17,10 @@ must wait until the final manuscript, tag, and DOI are available.
 
 - Root `README.md` presents the project, canonical result doc, transparency
   card pack, portfolio brief, and HF dataset link.
-- `CITATION.cff` exists and is machine-readable citation metadata.
-- `.zenodo.json` exists as candidate Zenodo metadata.
+- `CITATION.cff` exists and is machine-readable citation metadata using the
+  current public repository identity.
+- `.zenodo.json` exists as candidate Zenodo metadata using the current public
+  repository identity.
 - `LICENSE` is present and declares MIT for code.
 - `docs/hf_dataset_card.md` is synchronized with the public HF card surface.
 - SpaceBio-Bench system, evaluation, readiness, claim, and transparency cards
@@ -30,16 +32,17 @@ must wait until the final manuscript, tag, and DOI are available.
 
 ## Needs Final Author Or Manuscript Review
 
-- Confirm author order and affiliations in `CITATION.cff`.
-- Confirm creator metadata in `.zenodo.json`.
+- Confirm final manuscript author list and affiliations in `CITATION.cff`.
+- Confirm final creator metadata in `.zenodo.json`.
 - Confirm final paper title and whether the archive title should match exactly.
 - Confirm final version string and release date.
 - Add DOI after Zenodo or the selected archive mints it.
 - Add dataset-specific OSDR citations for the manuscript subset.
 
 ## Needs Final Release Action
 
-- Create annotated Git tag.
+- Create annotated Git tag from the final public-card/archive-metadata commit
+  (recommended next patch tag: `v7.1.1`).
 - Create GitHub release from the tag.
 - Verify Zenodo deposition metadata.
 - Download source archive and record SHA-256 checksum.

diff --git a/docs/RELEASE_ARCHIVE_MANIFEST.md b/docs/RELEASE_ARCHIVE_MANIFEST.md
@@ -2,7 +2,7 @@
 title: GeneLab Benchmark Release Archive Manifest
 page_type: release_archive_manifest
 status: release_candidate_manifest
-last_reviewed: 2026-06-04
+last_reviewed: 2026-06-05
 claim_boundary: manifest_no_new_release_or_payload_claim
 ---
 
@@ -60,10 +60,12 @@ complete.
 
 ## Suggested Final Archive Procedure
 
-1. Confirm final manuscript title, author order, affiliations, and release
+1. Confirm final manuscript title, final author list, affiliations, and release
    version.
 2. Update `CITATION.cff` and `.zenodo.json` with final metadata.
-3. Create an annotated Git tag, for example `v7.1.0`.
+3. Create an annotated Git tag from the final public-card/archive-metadata
+   commit, for example `v7.1.1`. The existing `v7.1` GitHub release predates
+   the card-pack and archive-metadata files.
 4. Create a GitHub release from that tag.
 5. Let Zenodo mint the DOI from the GitHub release, or deposit manually with
    `.zenodo.json` metadata.
@@ -77,9 +79,9 @@ complete.
 Use these commands after the final release tag exists:
 
 ```bash
-git archive --format=tar.gz --prefix=GeneLab_benchmark-v7.1.0/ \
-  -o GeneLab_benchmark-v7.1.0.tar.gz v7.1.0
-shasum -a 256 GeneLab_benchmark-v7.1.0.tar.gz
+git archive --format=tar.gz --prefix=GeneLab_benchmark-v7.1.1/ \
+  -o GeneLab_benchmark-v7.1.1.tar.gz v7.1.1
+shasum -a 256 GeneLab_benchmark-v7.1.1.tar.gz
 ```
 
 For a source checkout:
@@ -94,7 +96,10 @@ du -sh .
 ## Known Archive Caveats
 
 - The paper archive DOI has not yet been minted.
-- Author metadata should be reviewed before final deposition.
+- The existing `v7.1` GitHub release predates the current card-pack and
+  archive-metadata polish; cite a successor tag once minted.
+- Final manuscript author-list metadata should be reviewed before final
+  deposition.
 - NASA OSDR source datasets need dataset-specific citation review for the
   manuscript subset.
 - v9 metadata-alpha evidence should remain separate from v1-v7 final result

diff --git a/docs/hf_dataset_card.md b/docs/hf_dataset_card.md
@@ -62,15 +62,18 @@ system scope, evaluation protocol, release-readiness gates, and claim boundaries
 can be reviewed together:
 
 - Transparency card pack:
-  https://github.com/jang1563/GeneLab_benchmark/blob/v3/docs/SPACEBIOBENCH_TRANSPARENCY_CARD_PACK.md
+  https://github.com/jang1563/GeneLab_benchmark/blob/main/docs/SPACEBIOBENCH_TRANSPARENCY_CARD_PACK.md
 - System card:
-  https://github.com/jang1563/GeneLab_benchmark/blob/v3/docs/SPACEBIOBENCH_SYSTEM_CARD.md
+  https://github.com/jang1563/GeneLab_benchmark/blob/main/docs/SPACEBIOBENCH_SYSTEM_CARD.md
 - Evaluation card:
-  https://github.com/jang1563/GeneLab_benchmark/blob/v3/docs/SPACEBIOBENCH_EVALUATION_CARD.md
+  https://github.com/jang1563/GeneLab_benchmark/blob/main/docs/SPACEBIOBENCH_EVALUATION_CARD.md
 - Release readiness card:
-  https://github.com/jang1563/GeneLab_benchmark/blob/v3/docs/SPACEBIOBENCH_RELEASE_READINESS_CARD.md
+  https://github.com/jang1563/GeneLab_benchmark/blob/main/docs/SPACEBIOBENCH_RELEASE_READINESS_CARD.md
 - Claim register:
-  https://github.com/jang1563/GeneLab_benchmark/blob/v3/docs/SPACEBIOBENCH_CLAIM_REGISTER.md
+  https://github.com/jang1563/GeneLab_benchmark/blob/main/docs/SPACEBIOBENCH_CLAIM_REGISTER.md
+
+For DOI-oriented citation, use the final GitHub release tag and archive DOI
+recorded in the release archive manifest once minted.
 
 Current release wording: v1-v7 are the canonical historical benchmark and
 reviewer-facing feature-matrix surface; v8 and v9 are documented as extension or
@@ -291,13 +294,13 @@ Lung and Colon additionally include Basal Control samples treated as ground cont
 *(Manuscript in preparation)*
 
 ```bibtex
-@dataset{kang2026genelab,
+@dataset{kim2026genelab,
   title   = {GeneLab Benchmark: A Multi-Tissue Spaceflight Transcriptomics
              Benchmark for AI/ML Models},
-  author  = {Kang, Jaeyoung},
+  author  = {Kim, Jihoon},
   year    = {2026},
   url     = {https://huggingface.co/datasets/jang1563/genelab-benchmark},
-  note    = {v7.0 with v7.1 documentation consistency patch; data freeze 2026-03-01}
+  note    = {v7.0 with v7.1.1 documentation, public-card, and metadata consistency patch; data freeze 2026-03-01}
 }
 ```
 

diff --git a/tests/test_review_fixes.py b/tests/test_review_fixes.py
@@ -312,13 +312,20 @@ def test_public_release_metadata_uses_v7_consistently(self):
 
         self.assertIn("Version: v7.0 (2026-04-12) | Dataset freeze: 2026-03-01", readme)
         self.assertIn("Canonical v7.1 documentation source:", readme)
-        self.assertIn("note    = {v7.0 with v7.1 documentation consistency patch; data freeze 2026-03-01}", readme)
+        self.assertIn("note    = {v7.0 with v7.1.1 documentation, public-card, and metadata consistency patch; data freeze 2026-03-01}", readme)
         self.assertIn("Version: v7.0 with v7.1 documentation consistency patch | Dataset freeze: 2026-03-01", hf_card)
-        self.assertIn("note    = {v7.0 with v7.1 documentation consistency patch; data freeze 2026-03-01}", hf_card)
-        self.assertIn('version: "7.1.0"', citation)
-        self.assertIn('date-released: "2026-05-09"', citation)
-        self.assertIn('notes: "Manuscript in preparation; v7.1 documentation consistency patch."', citation)
-        self.assertIn("documentation and public metadata consistency patch", citation)
+        self.assertIn("note    = {v7.0 with v7.1.1 documentation, public-card, and metadata consistency patch; data freeze 2026-03-01}", hf_card)
+        self.assertIn('version: "7.1.1"', citation)
+        self.assertIn('date-released: "2026-06-05"', citation)
+        self.assertIn('notes: "Manuscript in preparation; v7.1.1 documentation, public-card, and metadata consistency patch."', citation)
+        self.assertIn("documentation, public-card, and metadata consistency patch", citation)
+        self.assertIn('family-names: "Kim"', citation)
+        self.assertIn('given-names: "Jihoon"', citation)
+        self.assertIn('affiliation: "Weill Cornell Medicine"', citation)
+        self.assertNotIn("Kang", citation)
+        self.assertNotIn("Jaeyoung", citation)
+        self.assertNotIn("JangKeun", readme + hf_card + citation)
+        self.assertNotIn("blob/v3/docs/SPACEBIOBENCH", hf_card)
         self.assertNotIn('version: "5.0.0"', citation)
         self.assertNotIn("Target journal:", citation)