fix(workflow): size auto tiles for the segment GPU's VRAM - #27
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Tile planning (prepare) runs on a CPU node, so it cannot query the segment GPU and falls back to an 8 GiB guess, logging "GPU memory query failed". Add a gpu_memory_gb config option forwarded to auto_tile_shape_cellpose so tiles are sized for the real GPU (e.g. 24, 40, 80) without a query or warning. null keeps the previous behaviour. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Summary
On SLURM the
prepare(tile planning) job runs on a CPU node, so it can't see the segment GPU. Withtile_shape: "auto"it logged:…and sized every tile for 8 GiB — harmless but under-utilises bigger GPUs.
Add a
gpu_memory_gbconfig field forwarded toauto_tile_shape_cellpose(gpu_memory=…)so tiles are sized for the real GPU (e.g.24,40,80) with no query and no warning.nullkeeps the old 8 GiB-guess behaviour. Documented in the config + guide.Test
auto_tile_shape_cellpose((64,4096,4096), do_3D=True, use_gpu=True, gpu_memory=24G)→(64,1753,1753)and emits no warning;gpu_memory=None→(64,915,915)with the fallback warning. Full local workflow run still 12/12.🤖 Generated with Claude Code