Name		Name	Last commit message	Last commit date
advanced-prompting		advanced-prompting
eval		eval
ground truth analysis		ground truth analysis
inter_model_compare		inter_model_compare
intra_model_compare		intra_model_compare
mcnemar		mcnemar
old_new_eval_compare		old_new_eval_compare
paper_length_error_rate		paper_length_error_rate
prompt		prompt
rag		rag
sql		sql
.gitignore		.gitignore
.python-version		.python-version
Makefile		Makefile
README.md		README.md
auto_extract_gpt.py		auto_extract_gpt.py
env_tmpl		env_tmpl
extract_sentences.py		extract_sentences.py
gpt.py		gpt.py
pdf_utils.py		pdf_utils.py
pyproject.toml		pyproject.toml
query_gemini.py		query_gemini.py
query_hivdb.py		query_hivdb.py
requirements.txt		requirements.txt
test_gemini_model.py		test_gemini_model.py
train_gemini_model.py		train_gemini_model.py
uv.lock		uv.lock
work.py		work.py

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chat_HIVDB_paper

start the environment

python3.9 -m venv env
source ./env/bin/activate
pip install -r requirements.txt

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