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- Status: Open.#25 In hermidalc/dragonfish;
Add known human contaminant sequences in microbe genomes to decoys or host filtering steps
enhancementNew feature or requestNew feature or requestStatus: Open.#24 In hermidalc/dragonfish;Finish SLURM setup so that workflow can get submitted to different nodes instead of running on one large node
enhancementNew feature or requestNew feature or requestStatus: Open.#23 In hermidalc/dragonfish;Functionality to automatically collapse functional terms to larger pathways and associated read counts for appropriate functional DBs (i.e. GO, EC)
enhancementNew feature or requestNew feature or requestStatus: Open.#22 In hermidalc/dragonfish;Input read host and decontaminant sequence filtering with HISAT2 (DNA, RNA) and STAR (RNA)
enhancementNew feature or requestNew feature or requestStatus: Open.#21 In hermidalc/dragonfish;Use tximport-like approach to summarize Cedar abundance by functional ID
enhancementNew feature or requestNew feature or requestStatus: Open.#19 In hermidalc/dragonfish;Cedar EM uncertainty/confidence scores
enhancementNew feature or requestNew feature or requestStatus: Open.#17 In hermidalc/dragonfish;Map and summarize BAM read counts per CDS protein ID to functional DB IDs
enhancementNew feature or requestNew feature or requestStatus: Open.Input RNA-seq ribosomal and structural RNA filtering (e.g. with SILVA)
enhancementNew feature or requestNew feature or requestStatus: Open.#6 In hermidalc/dragonfish;