Issues

• Security Policy violation Binary Artifacts

  allstar
  googlegenomics/dataflow-java#225 · Filter by author google-allstar-prod opened on Dec 15, 2022
  28

• Deprecate this repo?

  googlegenomics/dataflow-java#224 · Filter by author tswast opened on Jun 1, 2020

• Getting started instructions link in README 404s

  googlegenomics/dataflow-java#223 · Filter by author tswast opened on Jun 1, 2020

• Store data in info field of Reads proto into BigQuery table.

  googlegenomics/dataflow-java#222 · Filter by author nmousavi opened on Nov 8, 2018
  

• Validate the given BigQuery table in LoadReadsToBigQuery pipeline.

  googlegenomics/dataflow-java#221 · Filter by author nmousavi opened on Nov 8, 2018
  

• Update to a newer version of htsjdk dependency.

  googlegenomics/dataflow-java#216 · Filter by author deflaux opened on Sep 21, 2017

• Update ShardedBAMWriting to be compatible with parallel BAM reading.

  googlegenomics/dataflow-java#214 · Filter by author deflaux opened on Sep 15, 2017

• Identity By State variant streamer fails with write error

  googlegenomics/dataflow-java#213 · Filter by author pbilling opened on May 26, 2017
  1

• Push AnnotationUtils down into utils-java

  googlegenomics/dataflow-java#202 · Filter by author deflaux opened on Jun 15, 2016
  

• add support for STRICT intra-shard boundary

  googlegenomics/dataflow-java#201 · Filter by author deflaux opened on Jun 14, 2016
  

• Add integration test for DeleteVariants pipeline.

  googlegenomics/dataflow-java#190 · Filter by author deflaux opened on May 5, 2016

• Consider dividing integration tests into two groups.

  googlegenomics/dataflow-java#181 · Filter by author deflaux opened on Apr 15, 2016

• Add exponential backoff to deletion in CombineShards and also to SeekableGCSStream.

  googlegenomics/dataflow-java#173 · Filter by author iliat opened on Mar 2, 2016
  

• Add BAMDiff to integration test for sharded writing

  googlegenomics/dataflow-java#172 · Filter by author iliat opened on Mar 2, 2016
  

• Push HeaderInfo down into utils-java

  googlegenomics/dataflow-java#168 · Filter by author iliat opened on Feb 15, 2016
  

• Confirm that referenceSets for variants and reads match in VerifyBamId.

  enhancement
  googlegenomics/dataflow-java#156 · Filter by author deflaux opened on Dec 3, 2015
  

• Refactor ShardedBAMWriting for easier reuse

  googlegenomics/dataflow-java#141 · Filter by author iliat opened on Sep 7, 2015
  

• Move makeSAMRecord (from googlegenomics/gatk-tools-java) to ReadConverter

  googlegenomics/dataflow-java#102 · Filter by author davidadamsphd opened on Jun 24, 2015
  5

• Speed up git clone

  enhancementhelp wanted
  googlegenomics/dataflow-java#101 · Filter by author deflaux opened on Jun 24, 2015

• Update code to use Dataflow's new support for custom sources

  googlegenomics/dataflow-java#61 · Filter by author deflaux opened on May 4, 2015
  1