Issues

• Audit S4 generics on base functions; prefer internal-generic and S3 methods where possible

  giotto-suite/GiottoDisk#95 · Filter by author jiajic opened on Oct 7, 2026

• terra calculateOverlap errors on a polygon store with a single polygon

  giotto-suite/GiottoDisk#90 · Filter by author jiajic opened on Oct 6, 2026

• terra point-tile calculateOverlap double counts a polygon whose centroid lies on a tile edge

  giotto-suite/GiottoDisk#89 · Filter by author jiajic opened on Oct 6, 2026

• Reader-path tile writes nest a spurious tile_index=000/ level; breaks duckdb and sedonadb >= 0.4 reads

  giotto-suite/GiottoDisk#74 · Filter by author jiajic opened on Sep 25, 2026
  2

• Motif enrichment: tiled, streamed, chunked through GiottoDisk

  giotto-suite/GiottoDisk#72 · Filter by author jiajic opened on Sep 23, 2026

• parquetCoordinator resolves crop geom = "poly" as "centroid"

  giotto-suite/GiottoDisk#66 · Filter by author jiajic opened on Sep 18, 2026

• sourceAdopt() copies a temp VRT instead of the image for JPEG-2000 rasters

  giotto-suite/GiottoDisk#53 · Filter by author RubD opened on Aug 29, 2026

• Streaming markers hand-roll scran's pairwise statistics; propose a moments seam upstream

  giotto-suite/GiottoDisk#43 · Filter by author jiajic opened on Aug 14, 2026

• gram PCA: parallel band fan-out regresses time and peak memory on unnarrowed stores (serial path improves)

  giotto-suite/GiottoDisk#35 · Filter by author jiajic opened on Aug 8, 2026