Issues

• https://giottosuite.com/articles/merfish_mouse_sagittal_bil.html dies on clusterin

  bug
  giotto-suite/Giotto#1268 · Filter by author demographix opened on Jun 11, 2026
  1

• spatCellCellcom() crashes with do_parallel = TRUE due to non-exportable terra externalptr in @feat_info / @spatial_info slots

  giotto-suite/Giotto#1267 · Filter by author vjarzabek opened on Jun 4, 2026

• Error in findICF - 'result_cells' not found

  bug
  giotto-suite/Giotto#1229 · Filter by author daniannr opened on Feb 23, 2026
  1

• Analyse stereoseq from TMA with several core

  giotto-suite/Giotto#1224 · Filter by author synatkeamsk opened on Feb 9, 2026
  24

• How to measure similarity between samples using spatial genes from binSpect?

  giotto-suite/Giotto#1212 · Filter by author sfpacman opened on Nov 10, 2025

• Error in if (nrow(available > 0 & is.null(available$feat_type))) { : err

  bug
  giotto-suite/Giotto#1193 · Filter by author RunBelief opened on Sep 27, 2025
  1

• doHMRF

  giotto-suite/Giotto#1190 · Filter by author sfpacman opened on Aug 23, 2025
  1

• Leiden Subclustering Error in addCellMetadata

  bug
  giotto-suite/Giotto#1188 · Filter by author rbutleriii opened on Aug 20, 2025
  2

• GraphColoring.jar 缺失

  bug
  giotto-suite/Giotto#1187 · Filter by author hyz020106-cyber opened on Aug 18, 2025
  2

• doHMRF failing silently

  bug
  giotto-suite/Giotto#1183 · Filter by author ESS-UU opened on Jul 12, 2025
  1

• future implementation in spatCellCellcom encounters non-exportable reference.

  giotto-suite/Giotto#1181 · Filter by author rbutleriii opened on Jul 4, 2025

• Xenium data loading failed--out of memory

  giotto-suite/Giotto#1179 · Filter by author lh12565 opened on Jun 19, 2025
  1

• Xenium 5k dataset cannot load in memory

  bug
  giotto-suite/Giotto#1178 · Filter by author rbutleriii opened on Jun 19, 2025
  1

• runDWLS deconvolution error

  giotto-suite/Giotto#1163 · Filter by author BeatrizDolader opened on May 22, 2025

• VisiumHD image alignment

  giotto-suite/Giotto#1157 · Filter by author tbrunetti opened on May 17, 2025
  15

  

• Failure to resolve python location

  bug
  giotto-suite/Giotto#1155 · Filter by author demographix opened on May 13, 2025

• as_cholmod_sparse not included in Matrix--fix is to install irlba

  bug
  giotto-suite/Giotto#1154 · Filter by author demographix opened on May 13, 2025

• polys errors for cosmx data

  bug
  giotto-suite/Giotto#1145 · Filter by author fengyun198503 opened on May 5, 2025
  6

• cosmx data integrate analysis

  giotto-suite/Giotto#1135 · Filter by author fengyun198503 opened on Apr 1, 2025
  2

• giotto data loading error

  bug
  giotto-suite/Giotto#1132 · Filter by author fengyun198503 opened on Mar 24, 2025
  4

  

• request for the data in the paper

  giotto-suite/Giotto#1131 · Filter by author Huimin721 opened on Mar 11, 2025

• Documentation update createGiottoCosMxObject()

  giotto-suite/Giotto#1108 · Filter by author rbutleriii opened on Feb 27, 2025

• Working with multiple Visium HD samples.

  giotto-suite/Giotto#1091 · Filter by author ChristelleBrest opened on Jan 7, 2025
  1

• seuratToGiottoV5

  bug
  giotto-suite/Giotto#1086 · Filter by author DR-J-WAYEN opened on Dec 26, 2024
  1

• Error using reader functio to import VisiumHD data

  bug
  giotto-suite/Giotto#1084 · Filter by author jade-minzlaff opened on Dec 24, 2024
  4