Updates for MAPL3 compatibility - #3381

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lizziel wants to merge 134 commits into

mainfrom

Commits on Feb 10, 2026

Add methanediol chemistry following L. Yang et al., 2025
yantosca
committed
18d3ae6
Fixed issues in initial implementation of methanediol
yantosca
committed
661d154
Add PSO4AQ and PH2SO4 as products to certain reactions
yantosca
committed
4750dd2

Commits on Feb 11, 2026

Addition of multiphase sulfate chemistry according to https://doi.org/10.1021/acsetair.5c00136. Includes SO2 oxidation in aerosol water by H2O2, O3, NO2, HCHO, and TMI-catalzyed O2. Addition of clo…

Katherine R. Travis
authored and
yantosca
committed
d70c19b
Addition of multiphase sulfate chemistry according to https://doi.org/10.1021/acsetair.5c00136. Includes SO2 oxidation in aerosol water by H2O2, O3, NO2, HCHO, and TMI-catalzyed O2. Addition of clo…

Katherine R. Travis
authored and
yantosca
committed
d9cfd2b
Addition of multiphase sulfate chemistry according to https://doi.org/10.1021/acsetair.5c00136. Includes SO2 oxidation in aerosol water by H2O2, O3, NO2, HCHO, and TMI-catalzyed O2. Addition of clo…

Katherine R. Travis
authored and
yantosca
committed
c30d879
Edits to original pull request.

Katherine R. Travis
authored and
yantosca
committed
14eaf54
Rename State_Chm%Isorrop* fields to State_Chm%Ate*'
yantosca
committed
cbf7ec1
Rebuilt multiphase sulfate in fullchem mechanism w/ KPP 3.3.0
yantosca
committed
9241f03
Use DSTbin1..7 instead of DST1..4 in fullchem_HetStateFuncs.f90
yantosca
committed
2d6da95

Commits on Feb 12, 2026

Rebuild KPP mechanism with KPP 3.3.0
yantosca
committed
e4606f9

Commits on Feb 20, 2026

Remove 0.7 factor for dust in fullchem_SulfurChemFuncs.F90
yantosca
committed
4c6ea01

Commits on Feb 27, 2026

Merge PR #3072: Add PSO4AQ and PH2SO4 as products to certain rxns
yantosca
committed
5e7f0c3

Commits on Mar 2, 2026

Commits on Mar 9, 2026

Merge PR #3132 (Add methanediol chemistry into fullchem mechanism)
yantosca
committed
5fbf17c

Commits on Mar 23, 2026

Updates to enable use of 3D biomass burning input files (GFAS 3D) in TOMAS and new particle formation by organics and updated ternary scheme. Also KPP modified to fix bug for missing PSO4AQ and PH2…
Betty Croft
committed
2d4afb0
Added the BB3D switch to hcoi_gc_diagn_mod.F90
Betty Croft
committed
df2d6ea
Set new BB3D switch to false as current default (enables GFED to be default)
Betty Croft
committed
7e0c0d1

Commits on Mar 26, 2026

Added comments for 3D BB and accomodation coef code
Betty Croft
committed
218fd66

Commits on Mar 31, 2026

Comment out two print statements
Betty Croft
committed
0c1723e

Commits on Apr 2, 2026

Commits on Apr 3, 2026

Commits on Apr 7, 2026

Commits on Apr 8, 2026

Add numerical optimizations to routine SetStateHet
yantosca
committed
c37d460
Added extra species flags to the stub routine for SetStateHet
yantosca
committed
315e83a

Commits on Apr 9, 2026

Commits on Apr 10, 2026

Now copy an APM restart file into run directories
yantosca
committed
28a2fc4

Commits on Apr 22, 2026

Commits on Apr 24, 2026

Commits on Apr 27, 2026

Commits on Apr 28, 2026

Commits on Apr 29, 2026

Commits on Apr 30, 2026

Merge PR #3286 (Use RODAS3.1 integration method in fullchem sims)
yantosca
committed
0337c24

Commits on May 4, 2026

fixed leading-zero issue for TOMAS in fullchem_mod.F90 and turned on BB3D for testing
Betty Croft
committed
73fd9a7
shut off BB3D as default
Betty Croft
committed
c2220d1
updates following Bob's review, correction for double precision, revised data statements, removed debug code that was not needed
Betty Croft
committed
32e03e9
Update CHANGELOG.md
Betty Croft
committed
d65f3d5
Comment out "ENDIF" that was accidentally missed when commenting out of rest of related IF block
Betty Croft
committed
2196c76

Commits on May 7, 2026

Initial commits for MAPL3
lizziel
committed
0f58fc6
Merge PR #3257 (Updates for TOMAS' NPF, accom coeff, and 3D GFAS)
yantosca
committed
ccaf1a4
Merge PR #3260 (Fix incorrect InvAFCID diagnostic entries)
yantosca
committed
e6dde73

Commits on May 8, 2026

Fix build errors when building with MAPL2
lizziel
committed
ac98405

Commits on May 11, 2026

Updates to GCHP code to enable either MAPL2 or MAPL3
lizziel
committed
1e07a2a
Fix bugs preventing GC-Classic build
lizziel
committed
f8e8d88

Commits on May 14, 2026

Restore GEOS subdirectory code to use MAPL2
lizziel
committed
67c750a
Remove unused allocated arrays in dust_mod and now empty cleanup routine
lizziel
committed
666ddfc
Replace MODEL_ with MODEL_EXTERNAL for external model compile-time option
lizziel
committed
934771f
Minor cleanup
lizziel
committed
83799a9
Continue to remove USE_ESMF from code blocks without ESMF
lizziel
committed
e506a74
Update changelog
lizziel
committed
9350e5e

Commits on May 15, 2026

Put GCHP yaml files under version control in run directory
lizziel
committed
e15ac96

Commits on May 18, 2026

Update comments in extdata.yaml for GCHP transport tracers for clarity
lizziel
committed
568486e
Add build script for GCHP in runScriptSamples for Harvard
lizziel
committed
7c9e07d
Add GCHP utility script to extract timing info summary from allPEs.log
lizziel
committed
645410f
Updated changelog
lizziel
committed
bb58b2a
Fixed typos
lizziel
committed
6cde56e
Merge PR #3277 (MAPL3 compatibility)
yantosca
committed
9ea5acf
Merge PR #3303 (GCHP run directory improvements)
yantosca
committed
2cc2774

Commits on May 20, 2026

Commits on May 27, 2026

Commits on May 28, 2026

Merge PR #3309 (Fixed parallelization error in TOMAS)
yantosca
committed
c53a220
Switch on GFAS as default in rundir config files
yantosca
committed
659ce63
Add generic gchp.build to GCHP runScriptSamples, and update README
lizziel
committed
77559b7
Replace = with == in several GCHP run script for consistency
lizziel
committed
1640532
Add huce_ice partition to Harvard gchp.run script
lizziel
committed
d69b9bb
Minor updates to GCHP build scripts
lizziel
committed
3ad914c
Fixed runtime error in gc_4x5_merra2_carbon_CH4_straddle_00z test
yantosca
committed
fc72cc2
Fixed inconsistencies in HEMCO_Diagn.rc and HISTORY.rc
yantosca
committed
10fa8c1
Remove gc_4x5_merra2_carbon_CH4_straddle_00z from quick tests
yantosca
committed
7255f6d

Commits on May 29, 2026

Add GFAS entries to ExtData.rc templates
yantosca
committed
9ff6568
Bug fix: Turn on GFAS in GCHP HEMCO_Config.rc.fullchem template
yantosca
committed
36a62e8

Commits on Jun 1, 2026

Merge PR #3321 (GCHP runScriptSamples for harvard and aws)
yantosca
committed
01d7cc0

Commits on Jun 2, 2026

Commits on Jun 11, 2026

Merge PR #3322 (ExtData2G config for GCHP tagO3)
yantosca
committed
375d7fd

Commits on Jun 17, 2026

Added TODO to run/CESM/HEMCO_Config.rc

yantosca
and
lizziel
authored
38c98d1

Commits on Jun 23, 2026

Bug fix: add GFAS entry for SOAP in HEMCO_Config.rc.aerosol
yantosca
committed
b8fe58f

Commits on Jun 24, 2026

Merge PR #3317 (Switch on GFAS in rundir config files)
yantosca
committed
0974738

Commits on Jul 8, 2026

Commits on Jul 13, 2026

Fix bug in GEOS-IT settings text file used for rundir creation on discover
lizziel
committed
ae27e63
Updated changelog
lizziel
committed
3573921
Merge branch 'feature/gchp_ctmenv_only_simulation' into dev/14.8.0
lizziel
committed
06ddab6

Commits on Jul 15, 2026

Commits on Jul 17, 2026

Updates to configure with latest updates for MAPL3
lizziel
committed
cfebf21

Commits on Jul 21, 2026

Update MAPL3 code for compatibility with latest MAPL develop branch
lizziel
committed
b938a66

Commits on Jul 28, 2026

Fixes and updates for compatibility with latest MAPL3 (now develop branch)
lizziel
committed
fa36649

Commits on Jul 29, 2026

Updates for mapl_acg, but keep commented out for now
lizziel
committed
2f12723
Update cap.yaml with new MAPL library names
lizziel
committed
f4b7d9d
Update GCHP clean and run scripts for MAPL3
lizziel
committed
31aa2a1

Commits on Aug 3, 2026

Add preliminary draft of GEOS-Chem StateSpecs file
lizziel
committed
0b25309
Add space after cmake commands in main CMakeLists.txt for readability
lizziel
committed
af03937
Minor fixes in GEOSChem_StateSpecs.ag file
lizziel
committed
f9b71a2

Commits on Aug 7, 2026

Commits on Aug 10, 2026

Change setservice in yaml files to setservices to go with MAPL bug fix
lizziel
committed
823c106

Commits on Aug 11, 2026

Commits on Aug 26, 2026

Update MAPL3 test case config files for compatibility with latest updates
lizziel
committed
83fc952

Commits on Aug 27, 2026

Update mapl3 transport tracers config files prior to testing
lizziel
committed
638e5b5

Commits on Sep 14, 2026

Run directory fixes for GCHP MAPL3 two children test case
lizziel
committed
5f78b27