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5,272 changes: 5,272 additions & 0 deletions 2026_tdl_challenge/outputs/2026-07-27_05-00-00/results.json

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41 changes: 41 additions & 0 deletions configs/model/cell/smcn.yaml
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_target_: topobench.model.TBModel

model_name: smcn
model_domain: cell

feature_encoder:
_target_: topobench.nn.encoders.${model.feature_encoder.encoder_name}
encoder_name: AllCellFeatureEncoder
in_channels: ${infer_in_channels:${dataset},${oc.select:transforms,null}}
out_channels: 64
proj_dropout: 0.0

backbone:
_target_: topobench.nn.backbones.cell.smcn.SMCN
in_channels: ${model.feature_encoder.out_channels}
sub_channels: 32
n_cin_layers: 1
n_scl_layers: 3
num_mlp_layers: 2
max_rank_out: 1
max_dist: 10
dropout: 0.0

backbone_wrapper:
_target_: topobench.nn.wrappers.SMCNWrapper
_partial_: true
wrapper_name: SMCNWrapper
out_channels: ${model.feature_encoder.out_channels}
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}}

readout:
_target_: topobench.nn.readouts.${model.readout.readout_name}
readout_name: PropagateSignalDown
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}}
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}}
pooling_type: sum

# compile model for faster training with pytorch 2.0
compile: false
43 changes: 43 additions & 0 deletions configs/model/cell/smcn_difflift.yaml
Original file line number Diff line number Diff line change
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_target_: topobench.model.TBModel

model_name: smcn_difflift
model_domain: cell

feature_encoder:
_target_: topobench.nn.encoders.${model.feature_encoder.encoder_name}
encoder_name: AllCellFeatureEncoder
in_channels: ${infer_in_channels:${dataset},${oc.select:transforms,null}}
out_channels: 64
proj_dropout: 0.0

backbone:
_target_: topobench.nn.backbones.cell.smcn.SMCN
in_channels: ${model.feature_encoder.out_channels}
sub_channels: 32
n_cin_layers: 1
n_scl_layers: 3
num_mlp_layers: 2
max_rank_out: 1
max_dist: 10
dropout: 0.0
learned_lifting: true # 2-cells selected end-to-end (DiffLift)
sharpening: 10.0

backbone_wrapper:
_target_: topobench.nn.wrappers.SMCNWrapper
_partial_: true
wrapper_name: SMCNWrapper
out_channels: ${model.feature_encoder.out_channels}
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}}

readout:
_target_: topobench.nn.readouts.${model.readout.readout_name}
readout_name: PropagateSignalDown
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}}
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}}
pooling_type: sum

# compile model for faster training with pytorch 2.0
compile: false
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