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Bug report: Potential annotation bug after genome rotation

Status: Open.

#431 In gbouras13/pharokka;

· guluzi opened on Jul 2, 2026

Overlapping Genes

questionFurther information is requestedFurther information is requested

Status: Open.

#429 In gbouras13/pharokka;

· a-kaestner opened on May 28, 2026

Feature request: Change the direction of #labels to horizontal

Status: Open.

#428 In gbouras13/pharokka;

· ronepz opened on May 5, 2026

Issue regarding negative location values.

Status: Open.

#418 In gbouras13/pharokka;

· hjgwak opened on Jan 15, 2026

Alternate coding table functionality is broken

Status: Open.

#417 In gbouras13/pharokka;

· usmanenam opened on Jan 9, 2026

Feature Request: Proteomics Data

enhancementNew feature or requestNew feature or request

Status: Open.

#367 In gbouras13/pharokka;

· linsalrob opened on Nov 13, 2024

ValueError: Duplicate key (while no duplicated ids in input)

bugSomething isn't workingSomething isn't working

Status: Open.

#361 In gbouras13/pharokka;

· art-egorov opened on Oct 4, 2024

Issues with pharokka_multiplotter.py: IndexError: index -1 is out of bounds for axis 0 with size 0

bugSomething isn't workingSomething isn't working

Status: Open.

#348 In gbouras13/pharokka;

· aryehjc opened on Jun 24, 2024

Replace hmmscan with hmmsearch

enhancementNew feature or requestNew feature or request

Status: Open.

#330 In gbouras13/pharokka;

· valentynbez opened on Feb 9, 2024

KeyError: 'Name contig'

bugSomething isn't workingSomething isn't working

Status: Open.

#327 In gbouras13/pharokka;

· SergeyBaikal opened on Feb 1, 2024