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Pull requests: galaxyproject/tools-iuc

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Pull requests list

[WIP] adds a statistics script and a few plot
#8152 opened Jul 2, 2026 by bgruening Member • Draft
4 tasks
maaslin3: Add Formular vs Individual Factors in model specification ready-for-review
#8149 opened Jun 30, 2026 by MaraBesemer Contributor Loading…
5 tasks
2
Remove the download option to obitaxonomy
#8147 opened Jun 30, 2026 by kpayet26 Contributor Loading…
3 of 5 tasks
1
Wrap warcio indexing tool
#8143 opened Jun 26, 2026 by eamonnbell-dur • Draft
5 tasks
Update spatialdata to version 0.7.2 cofest wip
#8141 opened Jun 26, 2026 by nilchia Collaborator • Draft
3 of 5 tasks
@nilchia
1
Add Enzwizzerd tools to Galaxy
#8139 opened Jun 25, 2026 by khaled196 Contributor • Draft
3 of 5 tasks
MultiQC: add sourmash module (compare + gather)
#8112 opened Jun 17, 2026 by nekrut Contributor Loading…
6
vg: fix help RST and apply IUC tool_xml formatting conventions
#8095 opened Jun 13, 2026 by richard-burhans Member Loading…
2
Fix large parts of testcase validation errors skip-url-check Allow IUC members to skip the URL linter in PR reviews. skip-version-check Allow IUC members to skip the version linter in PR reviews (use only for partially updated suites).
#8094 opened Jun 12, 2026 by mvdbeek Member Loading…
5 tasks
4
featureCounts: apply IUC tool_xml formatting conventions
#8090 opened Jun 11, 2026 by richard-burhans Member Loading…
20
Add tool Gapseq ready-for-review skip-url-check Allow IUC members to skip the URL linter in PR reviews.
#8078 opened Jun 9, 2026 by daduijker Loading…
3 of 5 tasks
15
New tool WGCNA ready-for-review
#8059 opened Jun 2, 2026 by Ishikaarora13 Contributor Loading…
1 of 3 tasks
130
Updating tools/trinity from version 2.15.1 to 2.15.2
#8054 opened Jun 1, 2026 by gxydevbot Collaborator Loading…
1
Fix log file handling to append instead of overwrite
#8047 opened Jun 1, 2026 by mthang Contributor Loading…
2 of 5 tasks
linter fixes to krakentools skip-version-check Allow IUC members to skip the version linter in PR reviews (use only for partially updated suites).
#8044 opened May 29, 2026 by bernt-matthias Contributor Loading…
3 of 5 tasks
5
New tool : multiclassprediction
#8041 opened May 28, 2026 by renu-pal Contributor Loading…
4 tasks
7
Add fallback to Maxbin2 ready-for-review
#8015 opened May 24, 2026 by SantaMcCloud Contributor Loading…
3 of 5 tasks
19
Add spaCy NLP tool and data manager
#8006 opened May 20, 2026 by ksuderman Contributor Loading…
5 tasks done
11
Add Stanford CoreNLP tool and data manager
#8005 opened May 20, 2026 by ksuderman Contributor Loading…
6 tasks done
8
Add Stanza NLP tool and data manager
#8004 opened May 20, 2026 by ksuderman Contributor Loading…
5 tasks done
11
Add entity geocoding tool
#8003 opened May 20, 2026 by ksuderman Contributor Loading…
5 tasks done
16
Gtdbtk update and make it actually work
#7987 opened May 14, 2026 by bgruening Member Loading…
3
hifiasm: fix --primary output, --hg-size decimals, test typos, modern profile
#7985 opened May 13, 2026 by alpapan Loading…
1 of 4 tasks
8
Update gtdbtk
#7983 opened May 11, 2026 by paulzierep Contributor Loading…
3 of 5 tasks
10
picrust2 update
#7971 opened May 10, 2026 by bgruening Member Loading…
5 tasks
1
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