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Adjust MAPQ based on difference between best and suboptimal alignment scores

Status: Open.

#62 In fulcrumgenomics/stitch;

· jdidion opened on Oct 3, 2023

Determine best default values for jump_score_* parameters

Status: Open.

#57 In fulcrumgenomics/stitch;

· jdidion opened on Sep 19, 2023

Ability to align against a multi-contig construct

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In fulcrumgenomics/stitch;

· jdidion opened on Sep 19, 2023

Additional PrimaryPickingStrategys

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In fulcrumgenomics/stitch;

· jdidion opened on Sep 19, 2023

Add an option to align to each contig separately and jointly to pick the highest score

Status: Open.

#16 In fulcrumgenomics/stitch;

· nh13 opened on Jun 7, 2023

Require the alignment to start and end on a specific contig

Status: Open.

#15 In fulcrumgenomics/stitch;

· nh13 opened on Jun 7, 2023

Tool to "invert" the alignments

Status: Open.

#5 In fulcrumgenomics/stitch;

· nh13 opened on May 31, 2023