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Possible regression: same-strand translocations give no BND call at all in v2.8.0

bug

enhancement

Status: Open.

#612 In fritzsedlazeck/Sniffles;

· awgymer opened on Aug 31, 2026

·  

2.9

Brand New User Question. Having trouble using Sniffles2 to find inversion differences between two individuals. Help?

Status: Open.

#605 In fritzsedlazeck/Sniffles;

· NateHanby opened on Apr 11, 2026

Sniffles2 calls unrealistically large deletions (>60 Mb) with PASS filter in clinical WGS

Status: Open.

#603 In fritzsedlazeck/Sniffles;

· enes-ak opened on Mar 30, 2026

Massive unrealistic DUP in Sniffles 2.7 output

Status: Open.

#600 In fritzsedlazeck/Sniffles;

· Dario-Galanti opened on Dec 19, 2025

clarification of coverage in Sniffles2 VCF

Status: Open.

#598 In fritzsedlazeck/Sniffles;

· svedwards opened on Nov 16, 2025

Support for MATEID when reporting breakends with known mates?

enhancement

Status: Open.

#589 In fritzsedlazeck/Sniffles;

· roland-ewald opened on Sep 29, 2025

·  

2.9

Parameter suggestions for Sniffles to detect transposable elements from ONT data

Status: Open.

#578 In fritzsedlazeck/Sniffles;

· amarkez opened on Aug 13, 2025

Wrong insertion can be inferred from split alignments

Status: Open.

#561 In fritzsedlazeck/Sniffles;

· HillJamie opened on May 14, 2025

Expectations regarding discrepancies in individual vs population called VCFs

Status: Open.

#546 In fritzsedlazeck/Sniffles;

· stallmanGEL opened on Mar 4, 2025

Difference between SUPPORT, DV and RNAMES

bug

enhancement

Status: Open.

#496 In fritzsedlazeck/Sniffles;

· kamilafras opened on Jul 17, 2024

·  

2.9

Detection of Reciprocal BNDs

enhancement

Status: Open.

#486 In fritzsedlazeck/Sniffles;

· Carly-KT opened on Jun 11, 2024

·  

2.9

Enhancement: sample ID handling

enhancement

Status: Open.

#443 In fritzsedlazeck/Sniffles;

· ptrebert opened on Dec 1, 2023