Issues

Detecting/correcting manifest errors (MEGA array) unearthed comparing genotype to WGS data
freeseek/gtc2vcf#88 · opened on Apr 8, 2025
5
Normalised BAF tag under FORMAT is not associated with the <ALT> allele
freeseek/gtc2vcf#84 · opened on Jan 31, 2025
3
Negative normalized intensities?
freeseek/gtc2vcf#83 · opened on Jan 28, 2025
Plot variant (for Illumina data) gtc2vcf_plot.R error: Error: unexpected '\\' in "gtc2vcf_plot.R \"
freeseek/gtc2vcf#82 · opened on Jan 15, 2025
11
Records represented as [D/I] in manifest.
freeseek/gtc2vcf#76 · opened on Aug 12, 2024
10
Drop marker if SourceSeq maps to different loci equally well.
freeseek/gtc2vcf#74 · opened on Aug 7, 2024
3
Pseudo-autosomal regions (PAR).
freeseek/gtc2vcf#72 · opened on Aug 1, 2024
1
Error while running linsolve1
freeseek/gtc2vcf#70 · opened on Jul 10, 2024
1
Add an explicit FORMAT/TAG for illumina genotype?
freeseek/gtc2vcf#69 · opened on Jun 21, 2024
3
ALLELE_A and ALLELE_B encoding in the VCF?
freeseek/gtc2vcf#68 · opened on Jun 20, 2024
4
Loci skipped with SourceSeq mapping.
freeseek/gtc2vcf#65 · opened on Apr 19, 2024
1
CNV and coordinates mapping issue?
freeseek/gtc2vcf#64 · opened on Apr 19, 2024
1
Unexpected Error: uncaught exception
freeseek/gtc2vcf#62 · opened on Mar 8, 2024
2
Segfault with cel-files not succesful.
freeseek/gtc2vcf#60 · opened on Jan 24, 2024
1
Error Encountered while parsing the input
freeseek/gtc2vcf#59 · opened on Nov 1, 2023
2
Affy2vcf snp-posterior file
freeseek/gtc2vcf#58 · opened on Oct 16, 2023
9