SQUARNA benchmark data

M.D. Serdakov, D.R. Bohdan, G.I. Nikolaev, J.M. Bujnicki, E.F. Baulin (2026) Revisiting the base pair maximization approach for RNA secondary structure prediction with SQUARNA. bioRxiv. DOI: 10.64898/2026.06.30.735492

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Content

• benchmarks - Benchmark tables & figures
• datasets - Single-sequence and alignment datasets
• BenchmarkingSingleSeq.py - Benchmarking script for single-sequence predictions
• BenchmarkingAlignment.py - Benchmarking script for alignment-based predictions
• BenchmarkingSingleSeqShape.py - Benchmarking script for single-sequence predictions with chemical probing data