Credit / Blame / Contact - Tobias Wood - tobias.wood@kcl.ac.uk
This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
If you find the tools useful the author would love to hear from you.
This is the updated version of QUIT based on ITK http://www.itk.org The previous version is here http://github.com/spinicist/old_quit
A collection of programs for processing quantitative MRI data, originally DESPOT but now a wider variety of techniques.
Many thanks to Samuel Hurley for many, many suggestions. Thanks to Anna Combes, Amy McDowell and Sjoerd Vos for finding bugs in early versions.
Documentation is available at http://quit.readthedocs.io (and the in Docs folder in .rst format).
Pre-compiled binaries are provided for Linux and Mac OS X in a .tar.gz archive from http://github.com/spinicist/QUIT/releases.
Download the correct archive for your platform, untar it and then ensure that
the binaries can be found via your PATH environment variable. The Linux
binaries are built with Ubuntu 14.04 with GCC 6. If you need to run on an older
version of Linux with a previous version of glibc then you will need to
compile from source.
For instructions on how to compile from source, please see the developer page in the documentation.
Example scripts for mcDESPOT processing are provided in the installation archive. These print usage instructions if you call them with no arguments. They take a set of filenames as input, and you will need to modify the scripts with your particular flip-angles and TRs.
Each product has some basic usage instructions that will be printed with either
the -h or --help options, e.g. qimcdespot -h. The majority of programs take
the input filenames as arguments on the command-line, and in addition will read
an input text file from stdin. For further details, see the
documentation, which is also available in
the Docs folder.
If you can't find an answer to a problem in the documentation or help strings, you can open an issue, post a question on Neurostars or find the main developer on e-mail (tobias.wood@kcl.ac.uk) and Twitter (@spinicist).