add edits after review of outputs

[avallecam]

• Please check if the PR fulfills these requirements

• I have read the CONTRIBUTING guidelines
• A new item has been added to NEWS.md
• Tests for the changes have been added (for bug fixes / features)
• Docs have been added / updated (for bug fixes / features)
• Checks have been run locally and pass

• What kind of change does this PR introduce? (Bug fix, feature, docs update, ...)

• What is the current behavior? (You can also link to an open issue here)

• What is the new behavior (if this is a feature change)?

• Does this PR introduce a breaking change? (What changes might users need to make in their application due to this PR?)

• Other information:

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/epiverse-trace/tutorials-middle/compare/md-outputs..md-outputs-PR-269

The following changes were observed in the rendered markdown documents:

 delays-access.md                                   |  10 +-
 ...ransmissibility-rendered-unnamed-chunk-10-1.png | Bin 60889 -> 66764 bytes
 ...ssibility-rendered-unnamed-chunk-17-1.png (new) | Bin 0 -> 20012 bytes
 ...ransmissibility-rendered-unnamed-chunk-20-1.png | Bin 38756 -> 14604 bytes
 ...ssibility-rendered-unnamed-chunk-25-1.png (new) | Bin 0 -> 33611 bytes
 ...ssibility-rendered-unnamed-chunk-26-1.png (new) | Bin 0 -> 38921 bytes
 ...ty-static-rendered-unnamed-chunk-12-1.png (new) | Bin 0 -> 20002 bytes
 ...ty-static-rendered-unnamed-chunk-19-1.png (new) | Bin 0 -> 15503 bytes
 ...ty-static-rendered-unnamed-chunk-28-1.png (new) | Bin 0 -> 26146 bytes
 intro-cfr-adjust-delays.md                         | 128 +++++++-------
 intro-renewal-equation.md                          |   4 +-
 md5sum.txt                                         |  16 +-
 quantify-transmissibility.md                       | 187 ++++++++++++++++++---
 reference.md                                       |   2 +-
 severity-static.md                                 |  77 ++++++---
 superspreading-simulate.md                         |   7 +-
 16 files changed, 307 insertions(+), 124 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2026-07-05 19:15:02 +0000