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Match output directory naming convention

Status: Open.

#85 In epi2me-labs/wf-basecalling;

· HudoGriz opened on Apr 3, 2026

There is no default memory specification for steps/jobs

Status: Open.

#84 In epi2me-labs/wf-basecalling;

· TBradley27 opened on Mar 31, 2026

Dorado v1.3.1 Docker Image Release date

questionFurther information is requestedFurther information is requested

Status: Open.

#83 In epi2me-labs/wf-basecalling;

· jonathjd opened on Jan 20, 2026

include basecall model and output in Gb at the top of the report

Status: Open.

#82 In epi2me-labs/wf-basecalling;

· LisaHagenau opened on Jan 13, 2026

barcode_kit can't be selected even if duplex=false

Status: Open.

#80 In epi2me-labs/wf-basecalling;

· tgelafr-pfzr opened on Dec 4, 2025

wf_dorado:split_calls fails to demux CRAMs due to incompatible @SQ headers

Status: Open.

#78 In epi2me-labs/wf-basecalling;

· bnguyen-lilly opened on Nov 10, 2025

Dorado v.1.2.0

Status: Open.

#77 In epi2me-labs/wf-basecalling;

· tgelafr-pfzr opened on Oct 30, 2025

Unable to change hidden basecaller_chunk_size parameter with user.config

Status: Open.

#73 In epi2me-labs/wf-basecalling;

· istvankleijn opened on Aug 7, 2025

Inconsistency detected by ld.so leading to align_and_qsFilter error exit

Status: Open.

#72 In epi2me-labs/wf-basecalling;

· istvankleijn opened on Jul 7, 2025

[error] Unknown argument: --kit-name when combining --duplex with --barcode_kit SQK-NBD114-96

questionFurther information is requestedFurther information is requested

Status: Open.

#42 In epi2me-labs/wf-basecalling;

· chris-krohn opened on Jun 29, 2024

ln: failed to create symbolic link 'OPTIONAL_FILE': File exists

Status: Open.

#35 In epi2me-labs/wf-basecalling;

· weishwu opened on Mar 27, 2024

duplex basecalling with modified bases

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#32 In epi2me-labs/wf-basecalling;

· istvankleijn opened on Feb 15, 2024