This Shiny application allows users to upload a .zip file containing single-cell RNA-seq data in .h5ad format and visualize the data using UMAP (Uniform Manifold Approximation and Projection). The app processes the data, performs dimensionality reduction, and generates a UMAP plot to help users explore cell clusters and their relationships.
Features
- Upload ZIP File: Users can upload a
.zipfile containing.h5addata. - UMAP Visualization: The app automatically processes the data and generates a UMAP plot.
- Interactive Interface: The Shiny interface makes it easy to upload data and view results.
Benefits
- User-Friendly: No coding required; simply upload your data and view the results.
- Quick Insights: Quickly visualize cell clusters and identify patterns in single-cell RNA-seq data.
- Customizable: The UMAP plot can be customized to highlight different cell features.
How to Use
- Clone this repository.
- Install the required Python packages:
pip install shiny scanpy matplotlib and then run the app with "shiny run" command :)
