Awesome Medical AI Papers 🏥🤖

A comprehensive, auto-updating collection of cutting-edge AI research papers in medicine and healthcare, updated daily via GitHub Actions.

🎯 Research Categories

🔬 Foundation Models

Date	Title	Venue/Org	Code
2025-06-28	GNN's Uncertainty Quantification using Self-Distillation for Artificial Intellig	University of Cambridge	-
2024-03-08	Gemini 1.5: Unlocking multimodal understanding across millions of tokens of cont	Google DeepMind	-
2024-03-04	Claude 3 Technical Report	Anthropic	-
2023-12-19	Gemini: A Family of Highly Capable Multimodal Models	Google DeepMind	-
2023-11-27	MEDITRON-70B: Scaling Medical Pretraining for Large Language Models	EPFL	meditron
2023-07-18	Llama 2: Open Foundation and Fine-Tuned Chat Models	Meta AI	-
2023-05-17	PaLM 2 Technical Report	Google Research	-
2023-04-27	Towards Building Open-source Language Models for Medicine	Shanghai Jiao Tong Univer	-
2023-03-15	GPT-4 Technical Report	OpenAI	-
2023-02-27	LLaMA: Open and Efficient Foundation Language Models	Meta AI	-
2022-12-20	BioMedLM: A Domain-Specific Large Language Model for Biomedical Text	Stanford University	-
2022-09-19	BioGPT: Generative Pre-trained Transformer for Biomedical Text Generation and Mi	Microsoft Research	BioGPT
2022-04-05	PaLM: Scaling Language Modeling with Pathways	Google Research	-
2022-03-07	GatorTron: A Large Clinical Language Model to Unlock Patient Information from Cl	University of Florida	GatorTron
2022-01-05	Clinical-T5: Large Language Models Built Using MIMIC Clinical Text	Columbia University	-

🏥 Clinical LLMs & Decision Support

Date	Title	Venue/Org	Code
2025-05-30	MedOrch: Medical Diagnosis with Tool-Augmented Reasoning Agents for Flexible Ext	Microsoft Research	-
2025-05-10	XAI4LLM: Let Machine Learning Models and LLMs Collaborate for Enhanced In-Contex	University of Cambridge	-
2025-01-01	MedCoT: Medical Chain of Thought via Hierarchical Expert	Chinese Academy of Scienc	-
2024-04-29	Capabilities of Gemini Models in Medicine	Google Research	-
2024-01-15	HuatuoGPT-II: One-stage Training for Medical Adaption of LLMs	Chinese University of Hon	HuatuoGPT-II
2024-01-11	AMIE: A research AI system for diagnostic medical reasoning and conversations	Google Research	-
2024-01-11	Towards Conversational Diagnostic AI	Google DeepMind	-
2023-09-28	MKRAG: Medical Knowledge Retrieval Augmented Generation for Medical Question Ans	UCLA	MKRAG
2023-05-16	Towards Expert-Level Medical Question Answering with Large Language Models	Google Research	-
2023-03-24	ChatDoctor: A Medical Chat Model Fine-Tuned on a Large Language Model Meta-AI (L	UC San Diego	ChatDoctor
2023-03-20	Capabilities of GPT-4 on Medical Challenge Problems	Microsoft Research	-
2022-12-26	Large Language Models Encode Clinical Knowledge	Google Research	-
2019-09-25	A comparison of deep learning performance against health-care professionals in d	University College London	-
2018-08-13	Clinically applicable deep learning for diagnosis and referral in retinal diseas	DeepMind	-
2017-01-25	Dermatologist-level classification of skin cancer with deep neural networks	Stanford University	-

🩺 Medical Imaging & Vision

Date	Title	Venue/Org	Code
2024-08-01	MedSAM-2: Segment Medical Images As Video Via Segment Anything Model 2	Johns Hopkins University	MedSAM-2
2024-07-29	Segment Anything Model 2	Meta AI	segment-anything-2
2024-05-21	BiomedParse: A Biomedical Foundation Model for Image Parsing of Everything Every	Microsoft Research	-
2024-04-13	STU-Net: Scalable and Transferable Medical Image Segmentation Models Empowered b	Shanghai AI Laboratory	STU-Net
2023-10-23	SAM-Med3D	United Imaging Intelligen	SAM-Med3D
2023-04-24	Segment Anything in Medical Images	University of Toronto	MedSAM
2023-04-12	UniverSeg: Universal Medical Image Segmentation	MIT	UniverSeg
2022-11-05	An open-source framework for deep learning in healthcare	NVIDIA	MONAI
2022-11-01	Medical Image Segmentation with Diffusion Probabilistic Model	Stanford University	MedSegDiff
2022-08-11	TotalSegmentator: Robust Segmentation of 104 Anatomic Structures in CT Images	University Hospital Basel	TotalSegmentator
2021-01-07	nnU-Net: a self-configuring method for deep learning-based biomedical image segm	DKFZ German Cancer Resear	nnUNet
2017-07-01	Deep learning for medical image analysis: A survey	University of Amsterdam	-
2015-05-18	U-Net: Convolutional Networks for Biomedical Image Segmentation	University of Freiburg	Pytorch-UNet
2012-01-01	3D Slicer: A platform for subject-specific image analysis, visualization, and cl	Brigham and Women's Hospi	Slicer

📝 Clinical Documentation & NLP

Date	Title	Venue/Org	Code
2024-01-13	EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on E	Ohio State University	EhrAgent
2022-12-01	FHIR-based clinical data repository for machine learning: Implementation and eva	Mayo Clinic	-
2022-01-27	Clinical-Longformer and Clinical-BigBird: Transformers for long clinical sequenc	Allen Institute for AI	Code
2020-04-28	BEHRT: Transformer for Electronic Health Records	University of Oxford	BEHRT
2019-04-10	ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission	MIT	clinicalBERT
2018-05-08	Scalable and accurate deep learning with electronic health records	Google Research	-
2016-05-24	MIMIC-III, a freely accessible critical care database	MIT	-

💊 Drug Discovery & Development

Date	Title	Venue/Org	Code
2024-07-11	RFdiffusion: Diffusion model for protein design	University of Washington	RFdiffusion
2024-05-08	Accurate structure prediction of biomolecular interactions with AlphaFold 3	Google DeepMind	-
2024-05-08	AlphaFold Server: A unified platform for structure prediction	Google DeepMind	-
2024-03-16	ESMFold: Protein structure prediction with MSA transformers	Meta AI	esm
2022-10-04	Diffusion Steps, Twists, and Turns for Molecular Docking	MIT	DiffDock
2021-07-15	Highly accurate protein structure prediction with AlphaFold	DeepMind	alphafold
2021-07-15	Accurate prediction of protein structures and interactions using a three-track n	University of Washington	RoseTTAFold
2021-02-19	Molecular Contrastive Learning of Representations via Graph Neural Networks	Stanford University	MoCL
2020-10-19	ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Predic	Stanford University	bert-loves-chemistry
2020-02-20	A deep learning approach to antibiotic discovery	MIT	-
2020-02-19	Molecule attention transformer	Mila Quebec AI Institute	MAT
2019-09-02	Deep learning enables rapid identification of potent DDR1 kinase inhibitors	Insilico Medicine	-
2017-10-13	MoleculeNet: A benchmark for molecular machine learning	Stanford University	deepchem

⚖️ Ethics, Fairness & Regulation

Date	Title	Venue/Org	Code
2025-05-12	The promise and perils of AI in medicine	Stanford University	-
2025-05-10	Integrating Explainable AI in Medical Devices: Technical, Clinical and Regulator	UK Medicine and Healthcar	-
2024-03-11	Constitutional AI for Safe Medical Large Language Models	Stanford University	-
2024-02-28	Evaluating and Mitigating Discrimination in Language Model Decisions	Anthropic	-
2021-12-08	Ethical and social risks of harm from Language Models	DeepMind	-
2021-10-27	The false hope of current approaches to explainable artificial intelligence in h	University of Toronto	-
2021-08-16	On the Opportunities and Risks of Foundation Models	Stanford University	-
2020-09-09	Guidelines for clinical trial protocols for interventions involving artificial i	Stanford University	-
2019-10-25	Dissecting racial bias in an algorithm used to manage the health of populations	UC Berkeley	-
2018-12-04	Ensuring fairness in machine learning to advance health equity	Harvard Medical School	-

🎯 Multimodal AI

Date	Title	Venue/Org	Code
2024-10-05	LLaVA-Med: Large Language and Vision Assistant for Medicine	Microsoft Research	LLaVA-Med
2024-08-22	Qwen-VL: A Versatile Vision-Language Model for Understanding, Localization, Text	Alibaba	Qwen-VL
2024-07-28	Med-Flamingo: a Multimodal Medical Few-shot Learner	Stanford University	med-flamingo
2024-04-29	MedGemini: Multimodal Medical AI with Gemini	Google Research	-
2023-07-26	MultiMedBench: Large-Scale Benchmarking of Multimodal Medical AI	Google Research	-
2023-06-01	Training a Large Language-and-Vision Assistant for Biomedicine in One Day	Microsoft Research	LLaVA-Med
2023-03-02	A multimodal biomedical foundation model pretrained from fifteen million scienti	Microsoft Research	BiomedCLIP
2022-04-29	Flamingo: a Visual Language Model for Few-Shot Learning	DeepMind	-
2021-02-26	CLIP: Learning Transferable Visual Models From Natural Language Supervision	OpenAI	CLIP
2021-02-11	ALIGN: Vision-Language Pre-training with Image-Text Pairs	Google Research	-
2020-10-02	Contrastive Learning of Medical Visual Representations from Paired Images and Te	Stanford University	convirt

🔍 Radiology & Diagnostics

Date	Title	Venue/Org	Code
2024-11-30	RaDialog: A Large Vision-Language Model for Radiology Report Generation and Conv	Shanghai AI Laboratory	-
2024-08-04	RadFM: A 3D Radiology Foundation Model	Shanghai Jiao Tong Univer	-
2024-01-22	CheXagent: Towards a Foundation Model for Chest X-Ray Interpretation	Stanford University	CheXagent
2022-11-23	RoentGen: Vision-Language Foundation Model for Chest X-ray Generation	Stanford University	-
2022-09-15	Expert-level detection of pathologies from unannotated chest X-ray images via se	Stanford University	CheXzero
2022-07-26	RadImageNet: An Open Radiologic Deep Learning Research Dataset for Effective Tra	UCSF	-
2019-01-21	MIMIC-CXR: A large publicly available database of labeled chest radiographs	MIT	-
2018-11-20	Deep learning for chest radiograph diagnosis: A retrospective comparison of the	Stanford University	-
2017-11-14	CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learnin	Stanford University	CheXNet

🧠 Mental Health & Psychiatry

Date	Title	Venue/Org	Code
2025-08-20	Detecting and Explaining Postpartum Depression in Real-Time with Generative Arti	University of Vigo	-
2024-09-24	MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Lang	George Mason University	MentaLLaMA
2024-07-22	PsyLLM: Scaling up Global Mental Health Psychological Services with AI-based Lar	Tsinghua University	-
2022-05-20	Digital phenotyping and mobile sensing in mental health	Harvard Medical School	-
2022-04-08	Natural Language Processing Applied to Mental Illness Detection: A Narrative Rev	University of Toronto	-
2020-12-01	Machine learning in mental health: A systematic review	King's College London	-
2020-08-25	Artificial Intelligence in Mental Health and the Biases of Language Based Models	University of Washington	-
2017-06-06	The effectiveness of using a chatbot to provide mental health support: A systema	Stanford University	-

📊 Synthetic Data Generation

Date	Title	Venue/Org	Code
2023-04-06	Synthetic Data Generation for Healthcare	MIT	-
2023-04-04	Diffusion Models for Medical Image Synthesis	Stanford University	-
2022-06-13	SyntheX: Scaling Up Learning-based X-ray Image Analysis Through In Silico Experi	Johns Hopkins University	-
2022-10-24	Privacy-preserving synthetic health data	University of Toronto	-
2021-06-15	Synthetic data in machine learning for medicine and healthcare	ETH Zurich	-
2021-05-11	GANs for medical image synthesis: An empirical study	King's College London	-

🌍 Public Health & Epidemiology

Date	Title	Venue/Org	Code
2024-05-01	Forecasting Future World Health Reports with Large Language Models	WHO Collaborating Centre	-
2024-02-21	LLMs for Epidemic Intelligence: A Survey	Georgia Tech	-
2023-10-11	Deep learning for viral mutation prediction	Harvard Medical School	-
2023-01-21	Language models can predict public health trends	Harvard T.H. Chan School	-
2022-06-20	Using social media and internet search data for public health surveillance	Boston Children's Hospita	-
2021-06-02	COVID-19 detection from chest X-ray images using deep learning	University of Waterloo	COVID-Net

🧬 Genomics & Precision Medicine

Date	Title	Venue/Org	Code
2024-03-05	Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling	Stanford University	caduceus
2024-02-27	Evo: DNA foundation modeling from molecular to genome scale	Arc Institute	evo
2024-02-08	Toward Building a Foundation Model for Single-Cell Multi-omics Using Generative	University of Toronto	scGPT
2024-01-23	HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution	Stanford University	hyena-dna
2023-09-11	Cell2Sentence: Learning the Language of Life	ETH Zurich	-
2023-05-31	Transfer learning enables predictions in network biology	Broad Institute	Code
2023-03-16	Evolutionary-scale prediction of atomic-level protein structure with a language	Meta AI	esm
2023-01-11	Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Hum	InstaDeep	nucleotide-transformer
2022-07-21	Language models of protein sequences at the scale of evolution enable accurate s	Meta AI	esm
2021-09-08	Enformer: a transformer for gene expression prediction	DeepMind	deepmind-research
2021-02-06	DNABERT: pre-trained Bidirectional Encoder Representations from Transformers mod	Georgia Tech	DNABERT
2018-09-24	DeepVariant: a universal SNP and small-indel variant caller using deep neural ne	Google Research	deepvariant
2018-05-02	Deep learning for genomics: A concise overview	Princeton University	-

🔒 Medical Data Security & Privacy

Date	Title	Venue/Org	Code
2025-01-09	Privacy-preserving federated learning for collaborative medical data mining in m	Stanford University	-
2022-02-01	Federated learning and differential privacy for medical image analysis	University of Pennsylvani	-
2021-10-06	Truly privacy-preserving federated analytics for precision medicine with multipa	EPFL	-
2021-09-15	Federated learning for predicting clinical outcomes in patients with COVID-19	Mass General Brigham	-
2021-05-26	Swarm Learning for decentralized and confidential clinical machine learning	University of Warwick	-
2020-05-11	A federated learning framework for healthcare IoT devices	MIT	-

⌚ Wearable Devices & Health Monitoring

Date	Title	Venue/Org	Code
2022-04-22	Machine learning for healthcare wearable devices: The big picture	University of Edinburgh	-
2021-01-07	Wearable sensor data and self-reported symptoms for COVID-19 detection	Scripps Research	-
2019-11-14	Large-scale assessment of a smartwatch to identify atrial fibrillation	Stanford University	-

📈 Statistics & Trends

Collection Overview

• Total Papers: 141
• Papers with Code: 57
• Last Updated: 2025-09-02

Papers by Year

• 2025: 8 papers
• 2024: 32 papers
• 2023: 25 papers
• 2022: 24 papers
• 2021: 18 papers
• 2020: 11 papers
• 2019: 8 papers
• 2018: 6 papers
• 2017: 5 papers
• 2016: 2 papers
• 2015: 1 papers
• 2012: 1 papers

Top Organizations

• Stanford University: 23 papers
• Google Research: 12 papers
• Microsoft Research: 8 papers
• MIT: 8 papers
• Meta AI: 6 papers
• Google DeepMind: 5 papers
• University of Toronto: 5 papers
• DeepMind: 5 papers
• University of Washington: 3 papers
• Harvard Medical School: 3 papers

Most Active Categories

• 🔬 Foundation Models: 19 papers
• 🏥 Clinical LLMs & Decision Support: 16 papers
• 🩺 Medical Imaging & Vision: 14 papers
• 💊 Drug Discovery & Development: 13 papers
• 🧬 Genomics & Precision Medicine: 13 papers

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📚 Resources

• Survey Paper - Auto-generated comprehensive survey
• API Documentation - Access our data programmatically
• Contributing Guidelines - Help improve this collection

🤖 Automation Details & AI Technology Stack

This repository updates automatically every day at 00:00 UTC through GitHub Actions:

Data Sources

• APIs: ArXiv, PubMed, MedRxiv, BioRxiv, Semantic Scholar
• Institutional: Google Scholar, Microsoft Academic, Clinical Trials
• Industry: Company research blogs, GitHub releases

AI Tools & Frameworks Covered

• RAG Systems: LangChain, LlamaIndex, Haystack, vector databases (Pinecone, Weaviate, Chroma)
• AI Agents: AutoGPT, BabyAGI, SuperAGI, CrewAI, Microsoft AutoGen
• Model Frameworks: Hugging Face, OpenAI API, Anthropic Claude, Google Vertex AI
• Fine-tuning: LoRA, QLoRA, PEFT, Adapters, Prefix Tuning
• Deployment: TorchServe, Triton, BentoML, Ray Serve, vLLM
• Orchestration: Apache Airflow, Prefect, Dagster, Kubeflow
• MLOps: MLflow, Weights & Biases, Neptune, ClearML
• Safety: Guardrails AI, NeMo Guardrails, Constitutional AI
• Embeddings: Sentence Transformers, OpenAI Embeddings, Cohere Embed
• Prompt Engineering: DSPy, Guidance, Promptify, LangChain Templates
• Knowledge Graphs: Neo4j, Amazon Neptune, GraphRAG
• Model Compression: Quantization, Distillation, Pruning, ONNX

Search Keywords (100+ terms)

• Foundation Models: GPT-4, Claude, Gemini, Llama, Mistral, Falcon, Mixtral
• Medical LLMs: Med-PaLM, BioGPT, ClinicalBERT, BioBERT, PubMedBERT
• AI Techniques: RAG, Fine-tuning, Few-shot, Zero-shot, Chain-of-Thought, RLHF
• Machine Learning: Deep learning, Computer vision, NLP, Federated learning
• Clinical Applications: Decision support, Diagnosis, Treatment planning, Risk prediction
• Medical Imaging: Radiology AI, Pathology AI, Medical computer vision
• Healthcare Data: EHR analysis, Wearable devices, Genomics, Proteomics

📊 Key Research Areas

• Foundation Models: Large language models for medicine (Med-PaLM, BioGPT, clinical LLMs)
• Medical Imaging & Vision: AI for radiology, pathology, medical image analysis
• Clinical Decision Support: Diagnosis assistance, treatment recommendation, risk assessment
• Drug Discovery & Development: Molecular modeling, virtual screening, drug design
• Healthcare Data Analytics: EHR analysis, population health, predictive modeling
• Wearable & Remote Monitoring: IoT sensors, continuous monitoring, digital biomarkers
• Medical Data Security: Federated learning, differential privacy, secure computation
• Ethics & Regulation: AI safety, bias mitigation, FDA compliance, fairness

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