Best solution would be to modify the WDL (or write a new one) with a scatter across all submitted samples and then a final QC task.
Also, making the multiqc output more intelligible would be good. It should include total reads, mapped reads, % duplicates, insert size distribution, and the gene enrichment figure, for starters.
Best solution would be to modify the WDL (or write a new one) with a scatter across all submitted samples and then a final QC task.
Also, making the multiqc output more intelligible would be good. It should include total reads, mapped reads, % duplicates, insert size distribution, and the gene enrichment figure, for starters.