Summarize competing-risks article in summary.qmd with proper citation wiring - #30
Summarize competing-risks article in summary.qmd with proper citation wiring#30d-morrison with Copilot wants to merge 5 commits into
summary.qmd with proper citation wiring#30Conversation
Agent-Logs-Url: https://github.com/d-morrison/cie/sessions/db8367f0-5edb-434a-9c84-df3cdca34503 Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
summary.qmd with proper citation wiring
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Pull request overview
This PR replaces placeholder content in the book’s summary.qmd chapter with a cited synopsis of Gooley et al. (1999) on cumulative incidence vs. 1−Kaplan–Meier under competing risks, and adds the corresponding BibTeX entry so the citations render.
Changes:
- Rewrote
summary.qmdto summarize the competing-risks estimator comparison and provide a practical takeaway, with inline citations. - Added a
@gooley1999competingentry toreferences/references.biband referenced it from the new summary text.
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 2 comments.
| File | Description |
|---|---|
summary.qmd |
Replaces placeholder chapter content with a cited methodological summary and takeaway. |
references/references.bib |
Adds the Gooley et al. (1999) bibliography entry used by the new summary citations. |
| number = {6}, | ||
| pages = {695--706}, | ||
| doi = {10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O}, | ||
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O} |
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The url field contains raw < and > characters, which makes the URL invalid and can break link rendering in HTML/PDF outputs. Consider percent-encoding these characters (e.g., %3C / %3E) or using an alternative canonical URL that does not include angle brackets.
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O} | |
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6%3C695::AID-SIM60%3E3.0.CO;2-O} |
| author = {Gooley, Ted A. and Leisenring, Wendy and Crowley, John and Storer, Barry E.}, | ||
| title = {Estimation of Failure Probabilities in the Presence of Competing Risks: New Representations of Old Estimators}, | ||
| journal = {Statistics in Medicine}, | ||
| year = {1999}, | ||
| volume = {18}, | ||
| number = {6}, | ||
| pages = {695--706}, | ||
| doi = {10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O}, | ||
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O} |
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This new BibTeX entry is the only one in the file that indents fields with extra leading spaces. For consistency with the rest of references.bib, consider aligning the formatting (remove the extra indentation before field names).
| author = {Gooley, Ted A. and Leisenring, Wendy and Crowley, John and Storer, Barry E.}, | |
| title = {Estimation of Failure Probabilities in the Presence of Competing Risks: New Representations of Old Estimators}, | |
| journal = {Statistics in Medicine}, | |
| year = {1999}, | |
| volume = {18}, | |
| number = {6}, | |
| pages = {695--706}, | |
| doi = {10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O}, | |
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O} | |
| author = {Gooley, Ted A. and Leisenring, Wendy and Crowley, John and Storer, Barry E.}, | |
| title = {Estimation of Failure Probabilities in the Presence of Competing Risks: New Representations of Old Estimators}, | |
| journal = {Statistics in Medicine}, | |
| year = {1999}, | |
| volume = {18}, | |
| number = {6}, | |
| pages = {695--706}, | |
| doi = {10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O}, | |
| url = {https://doi.org/10.1002/(SICI)1097-0258(19990330)18:6<695::AID-SIM60>3.0.CO;2-O} |
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@copilot apply changes based on the comments in this thread |
Agent-Logs-Url: https://github.com/d-morrison/cie/sessions/91e679ab-393e-412c-8b1e-fbcc7173635f Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Agent-Logs-Url: https://github.com/d-morrison/cie/sessions/91e679ab-393e-412c-8b1e-fbcc7173635f Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Agent-Logs-Url: https://github.com/d-morrison/cie/sessions/91e679ab-393e-412c-8b1e-fbcc7173635f Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Applied the requested thread changes in |
references/references.bibto match style and fix DOI URL encoding issue