regtools

Scripts and libraries to perform motif searches inside genomes

Name		Name	Last commit message	Last commit date
Latest commit History 158 Commits
regtools		regtools
utils		utils
README.md		README.md
alignCore		alignCore
analyzeHits		analyzeHits
autoBiopy		autoBiopy
autoHMM		autoHMM
autoMast		autoMast
autoParallelBiopy		autoParallelBiopy
autoParams		autoParams
autoParamsTable		autoParamsTable
autoRSAT		autoRSAT
chk2Dists		chk2Dists
combineDists		combineDists
compareLiterature		compareLiterature
concateAlign		concateAlign
copyResults		copyResults
countHits		countHits
dispDist		dispDist
doBfile		doBfile
doBiopy		doBiopy
doCOGTable		doCOGTable
doGenomicDist		doGenomicDist
doGenomicDist_3.2		doGenomicDist_3.2
doHMM		doHMM
doHMMbuild		doHMMbuild
doMantel		doMantel
doMast		doMast
doOfs		doOfs
doParallelBiopy		doParallelBiopy
doRSAT		doRSAT
echoRSAT		echoRSAT
fasta2Nexus		fasta2Nexus
filterUpstream		filterUpstream
fixNexus		fixNexus
gbk2fna		gbk2fna
genomeStats		genomeStats
get16S		get16S
getAlignments		getAlignments
getAllDownstream		getAllDownstream
getDownstream		getDownstream
getIGS		getIGS
getIGSfromGFF		getIGSfromGFF
getLocus		getLocus
getMastEvalue		getMastEvalue
getRegLoc		getRegLoc
getRegRep		getRegRep
getRsatEvalue		getRsatEvalue
getScores		getScores
getThreshold		getThreshold
get_replicons.sh		get_replicons.sh
grepGO		grepGO
isNorm		isNorm
list_genbank_id.sh		list_genbank_id.sh
mapContigs		mapContigs
mergeMethods		mergeMethods
mergeMotifs		mergeMotifs
motifParams		motifParams
mrBayes2Newick		mrBayes2Newick
mrBayes2Newick_3.2		mrBayes2Newick_3.2
nexus2MrBayes		nexus2MrBayes
op2tab		op2tab
orgNet		orgNet
pangenomeNet		pangenomeNet
parallelBiopy		parallelBiopy
parseBiopy		parseBiopy
parseCOG		parseCOG
parseContigs		parseContigs
parseHMM		parseHMM
parseMast		parseMast
parseRSAT		parseRSAT
parseScores		parseScores
plotDist		plotDist
plotGeneHits		plotGeneHits
plotMethodDist		plotMethodDist
regCore		regCore
regDist		regDist
regHMM		regHMM
regList		regList
regRapresentative		regRapresentative
regStats		regStats
regTransitions		regTransitions
runCompare		runCompare
runDownstream		runDownstream
searchBiopy		searchBiopy
splitScaffold		splitScaffold
treeDist		treeDist
upstreamGetter		upstreamGetter

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