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29 changes: 24 additions & 5 deletions docs/models.rst
Original file line number Diff line number Diff line change
Expand Up @@ -48,11 +48,6 @@ Tile-level encoders
- 768
- ``0.5``
- Lu et al. (2024)
* - ``dinov2-vitb14``
- `DINOv2 ViT-B/14 <https://huggingface.co/timm/vit_base_patch14_dinov2.lvd142m>`_
- 768
- any (``0.5`` default)
- Oquab et al. (2024); natural-image (non-pathology) control, public weights; spacing-agnostic
* - ``hibou-b``
- `Hibou-B <https://huggingface.co/histai/hibou-b>`_
- 768
Expand Down Expand Up @@ -134,6 +129,30 @@ Tile-level encoders
- ``0.5``
- GenBio AI (2024)

Natural-image control
~~~~~~~~~~~~~~~~~~~~~~~

A non-pathology tile encoder, kept separate from the pathology-focused table
above. It holds the ViT architecture and self-supervised objective fixed while
varying only the pretraining domain, so it acts as a control for measuring the
effect of pathology pretraining. Being spacing-agnostic, it has no intrinsic
micron spacing and accepts any requested spacing, tiling at ``0.5`` µm/px by
default so it lands on the same tile geometry as the pathology encoders.

.. list-table::
:header-rows: 1

* - Preset
- Model
- Output dim
- Spacing (um)
- Notes
* - ``dinov2-vitb14``
- `DINOv2 ViT-B/14 <https://huggingface.co/timm/vit_base_patch14_dinov2.lvd142m>`_
- 768
- any (``0.5`` default)
- Oquab et al. (2024)

Dense tile grids
~~~~~~~~~~~~~~~~

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