chore: Comprehensive security audit and repository maintenance

package.json

@@ -107,9 +107,7 @@
     "@types/config": "^3.3.3",
     "async": "^3.2.4",
     "axios": "^1.6.0",
-    "bcryptjs": "^2.4.3",
     "bull": "^4.12.2",
-    "cheerio": "^1.0.0-rc.12",
     "compression": "^1.7.4",
     "config": "^3.3.9",
     "cors": "^2.8.5",
@@ -120,28 +118,23 @@
     "ffmpeg-static": "^5.2.0",
     "google-auth-library": "^10.2.1",
     "helmet": "^7.1.0",
+    "inquirer": "^12.9.4",
     "ioredis": "^5.3.2",
-    "jimp": "^0.22.10",
     "joi": "^17.11.0",
     "jsonwebtoken": "^9.0.2",
-    "kafka-node": "^5.0.0",
     "lodash": "^4.17.21",
     "moment": "^2.29.4",
-    "mongodb": "^6.2.0",
-    "mongoose": "^8.0.1",
-    "multer": "^1.4.5-lts.1",
     "node-fetch": "^3.3.2",
+    "ora": "^6.3.1",
     "p-queue": "^7.4.1",
     "p-retry": "^5.1.2",
     "p-timeout": "^6.1.2",
-    "pg": "^8.11.3",
     "pino": "^8.16.1",
     "pino-pretty": "^10.2.3",
     "prom-client": "^15.0.0",
     "rate-limiter-flexible": "^4.0.1",
     "redis": "^4.6.10",
     "rxjs": "^7.8.1",
-    "sequelize": "^6.35.0",
     "socket.io": "^4.7.4",
     "socket.io-client": "^4.7.4",
     "uuid": "^9.0.1",
@@ -172,10 +165,8 @@
     "@typescript-eslint/eslint-plugin": "^6.9.1",
     "@typescript-eslint/parser": "^6.9.1",
     "babel-jest": "^29.7.0",
-    "commitizen": "^3.0.0",
     "concurrently": "^8.2.2",
     "cross-env": "^7.0.3",
-    "cz-conventional-changelog": "^3.0.1",
     "eslint": "^8.53.0",
     "eslint-config-prettier": "^9.0.0",
     "eslint-plugin-import": "^2.29.0",
@@ -219,13 +210,27 @@
   "husky": {
     "hooks": {
       "pre-commit": "lint-staged",
-      "commit-msg": "commitizen",
       "pre-push": "npm run test:unit && npm run lint"
     }
   },
-  "config": {
-    "commitizen": {
-      "path": "cz-conventional-changelog"
+
+  "jest": {
+    "preset": "ts-jest",
+    "testEnvironment": "node",
+    "collectCoverageFrom": [
+      "src/**/*.{js,ts}",
+      "!src/**/*.d.ts",
+      "!src/benchmarks/**/*.js",
+      "!src/examples/**/*.js"
+    ],
+    "coverageThreshold": {
+      "global": {
+        "branches": 75,
+        "functions": 75,
+        "lines": 75,
+        "statements": 75
+      }
+
     }
   },
   "browserslist": [

src/adapters/deepmind-adapter.ts

@@ -138,7 +138,7 @@ export class DeepMindAdapter extends BaseModelAdapter {
 
   protected transformResponse(
     response: any,
-    request: ModelRequest,
+    _request: ModelRequest,
   ): ModelResponse {
     return {
       id: this.generateRequestId(),
@@ -156,7 +156,7 @@ export class DeepMindAdapter extends BaseModelAdapter {
     };
   }
 
-  protected handleError(error: any, request: ModelRequest): never {
+  protected handleError(error: any, _request: ModelRequest): never {
     const adapterError = this.createError(
       error.message || "DeepMind API error",
       error.code || "DEEPMIND_ERROR",

src/adapters/dynamic-adapter-loader.ts

@@ -278,7 +278,7 @@
         loadTime,
         loadedAt: new Date(),
         status: "failed",
         error: error.message,
       };
 
       this.loadedAdapters.set(spec.key, failedAdapter);
@@ -290,7 +290,7 @@
       this.emit("adapter_failed", {
         key: spec.key,
         name: spec.name,
         error: error.message,
         loadTime,
       });
 
@@ -355,7 +355,11 @@
       } catch {
         // Check if it's available in the package.json
         try {
-          const packageJson = require(process.cwd() + "/package.json");
+          const fs = await import("fs");
+          const path = await import("path");
+          const packageJsonPath = path.join(process.cwd(), "package.json");
+          const packageJsonContent = await fs.promises.readFile(packageJsonPath, 'utf-8');
+          const packageJson = JSON.parse(packageJsonContent);
           const allDeps = {
             ...packageJson.dependencies,
             ...packageJson.devDependencies,
@@ -393,7 +397,7 @@
             loaded.set(key, adapter);
           }
         } catch (error) {
           this.logger.warn(`Failed to load adapter ${key}:`, error.message);
         }
       }
     }

src/adapters/gemini-adapter.ts

@@ -57,7 +57,7 @@ export class GeminiAdapter extends BaseModelAdapter {
 
     try {
       // Transform request for Gemini API
-      const transformedRequest = this.transformRequest(request);
+      this.transformRequest(request);
 
       // Mock response for TDD
       const mockResponse = {
@@ -157,7 +157,7 @@ export class GeminiAdapter extends BaseModelAdapter {
 
   protected transformResponse(
     response: any,
-    request: ModelRequest,
+    _request: ModelRequest,
   ): ModelResponse {
     return {
       id: this.generateRequestId(),
@@ -175,7 +175,7 @@ export class GeminiAdapter extends BaseModelAdapter {
     };
   }
 
-  protected handleError(error: any, request: ModelRequest): never {
+  protected handleError(error: any, _request: ModelRequest): never {
     const adapterError = this.createError(
       error.message || "Gemini API error",
       error.code || "GEMINI_ERROR",

src/adapters/jules-workflow-adapter.ts

@@ -157,7 +157,7 @@ export class JulesWorkflowAdapter extends BaseModelAdapter {
 
   protected transformResponse(
     response: any,
-    request: ModelRequest,
+    _request: ModelRequest,
   ): ModelResponse {
     return {
       id: this.generateRequestId(),
@@ -180,7 +180,7 @@ export class JulesWorkflowAdapter extends BaseModelAdapter {
     };
   }
 
-  protected handleError(error: any, request: ModelRequest): never {
+  protected handleError(error: any, _request: ModelRequest): never {
     const adapterError = this.createError(
       error.message || "Jules workflow error",
       error.code || "WORKFLOW_ERROR",

src/adapters/unified-api.ts

@@ -21,7 +21,7 @@
 import {
   EnhancedStreamingAPI,
   EnhancedStreamingConfig,
   StreamingContext,
   StreamSession,
 } from "../streaming/enhanced-streaming-api.js";
 import {
@@ -31,8 +31,10 @@
   AudioStreamResponse,
   MultiModalChunk,
   StreamingSession,
+  StreamingContext,
   EdgeCacheConfig,
   CDNConfiguration,
+
 } from "../types/streaming.js";
 
 export interface UnifiedAPIConfig {
@@ -964,7 +966,7 @@
       });
 
       this.emit("streaming_session_created", session);
       return session;
     } catch (error) {
       this.logger.error("Failed to create streaming session", {
         sessionId,
@@ -1121,7 +1123,7 @@
   async adaptStreamQuality(
     sessionId: string,
     streamId: string,
-    targetQuality?: any,
+    _targetQuality?: any,
   ): Promise<boolean> {
     if (!this.streamingAPI) {
       return false;
@@ -1278,7 +1280,7 @@
         enableDataChannels: true,
         enableTranscoding: true,
       },
       caching: {
         enabled: true,
         ttl: 3600000, // 1 hour
         maxSize: 1000000000, // 1GB
@@ -1297,7 +1299,7 @@
           fallback: ["https://cdn2.example.com"],
           geographic: {},
         },
         caching: {
           strategy: "adaptive",
           ttl: 3600000,
           edgeLocations: ["us-east", "eu-west", "ap-southeast"],
@@ -1311,7 +1313,7 @@
       },
       synchronization: {
         enabled: true,
         tolerance: 50,
         maxDrift: 200,
         resyncThreshold: 500,
         method: "rtp",

src/agents/research-coordinator.ts

@@ -9,7 +9,6 @@
 import { Logger } from "../utils/logger.js";
 import { SecurityOptimizationManager } from "../core/security-optimization-manager.js";
 import crypto from "crypto";
-import axios from "axios";
 
 // Research interfaces
 export interface ResearchHypothesis {
@@ -971,64 +970,64 @@
   }
 
   // Additional placeholder methods would be implemented with actual AI logic
-  private async suggestMethodology(params: any): Promise<string> {
+  private async suggestMethodology(_params: any): Promise<string> {
     return "Experimental design with randomized controlled trial";
   }
-  private async predictOutcomes(params: any): Promise<string[]> {
+  private async predictOutcomes(_params: any): Promise<string[]> {
     return ["Positive correlation expected", "Effect size: medium"];
   }
-  private async defineSucessCriteria(params: any): Promise<string[]> {
+  private async defineSucessCriteria(_params: any): Promise<string[]> {
     return ["p < 0.05", "Effect size > 0.3"];
   }
-  private async assessHypothesisConfidence(params: any): Promise<number> {
+  private async assessHypothesisConfidence(_params: any): Promise<number> {
     return 0.75;
   }
   private async addToKnowledgeGraph(
-    hypothesis: ResearchHypothesis,
-    type: string,
+    _hypothesis: ResearchHypothesis,
+    _type: string,
   ): Promise<void> {
     /* Implementation */
   }
   private async initializeValidationFramework(
-    hypothesis: ResearchHypothesis,
+    _hypothesis: ResearchHypothesis,
   ): Promise<void> {
     /* Implementation */
   }
 
   // More placeholder methods...
   private async selectResearchDesign(
-    hypothesis: ResearchHypothesis,
+    _hypothesis: ResearchHypothesis,
   ): Promise<string> {
     return "Randomized Controlled Trial";
   }
   private async calculateSampleSize(
-    hypothesis: ResearchHypothesis,
+    _hypothesis: ResearchHypothesis,
   ): Promise<number> {
     return 100;
   }
   private async identifyControls(
-    hypothesis: ResearchHypothesis,
+    _hypothesis: ResearchHypothesis,
   ): Promise<string[]> {
     return ["Placebo control", "Time control"];
   }
   private async selectStatisticalTests(
-    hypothesis: ResearchHypothesis,
+    _hypothesis: ResearchHypothesis,
   ): Promise<string[]> {
     return ["t-test", "ANOVA"];
   }
   private async executeValidationMethodology(
     validation: ResearchValidation,
   ): Promise<any> {
     return { data: "simulated" };
   }
   private async performStatisticalAnalysis(
     validation: ResearchValidation,
   ): Promise<any> {
     return { p_value: 0.03, effect_size: 0.45 };
   }
   private async interpretResults(
     validation: ResearchValidation,
     hypothesis: ResearchHypothesis,
   ): Promise<any> {
     return {
       conclusions: ["Hypothesis supported by evidence"],
@@ -1068,8 +1067,8 @@
   }
 
   private async searchSingleDatabase(
-    db: AcademicDatabase,
-    query: any,
+    _db: AcademicDatabase,
+    _query: any,
   ): Promise<ResearchPaper[]> {
     // Implementation would make actual API calls to each database
     // This is a simplified mock implementation
@@ -1090,7 +1089,7 @@
 
   private async rankResultsByRelevance(
     results: ResearchPaper[],
     query: any,
   ): Promise<ResearchPaper[]> {
     // Implement relevance ranking algorithm
     return results.sort((a, b) => b.relevanceScore - a.relevanceScore);
@@ -1107,7 +1106,7 @@
 
   private async simulateSingleReview(
     paper: ResearchPaper,
     profile: any,
   ): Promise<PeerReview> {
     return {
       id: crypto.randomUUID(),
@@ -1173,7 +1172,7 @@
     section: string,
     hypothesis: ResearchHypothesis,
     validation: ResearchValidation,
     paper: ResearchPaper,
   ): Promise<string> {
     // Generate each section based on the research data
     switch (section) {