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code monkey
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ciarajudge/README.md

Hey, my name is Ciara 👋

I'm a research fellow at Oxford University, and I work on methods for modelling infectious disease outbreaks that incorporate traditional epidemiology as well as genetic data.

I love software development, maths, biology and science communication, and I try to use my passion for all of these things to make a positive difference in the field of human health. I'm currently working on EpiFusion, a program for jointly inferring outbreak trajectories and transmission dynamics by integrating phylodynamics and epidemiology via particle filtering.

test test test

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  1. EpiFusion EpiFusion Public

    Repository for EpiFusion, an infectious disease modelling framework built on the principles of phylodynamics and epidemiology

    Java 14 1

  2. INRB-UMIE/BDBV2026-Data INRB-UMIE/BDBV2026-Data Public

    Data and scripts for epidemiological analysis of the 2026 Bundibugyo Ebola outbreak

    Python 60 19

  3. EpiFusionUtilities EpiFusionUtilities Public

    R package for parsing output from EpiFusion joint phylodynamic and epidemiological inference software

    R

  4. YFV_Brazil YFV_Brazil Public

    Code and results for 'Joint epidemiological and phylodynamic inference of sylvatic yellow fever transmission drivers in Southeast Brazil'

    HTML

  5. cmmid/gaza-response cmmid/gaza-response Public

    R 2

  6. INRB-UMIE/BDBV2026-Epidemic_Dashboard INRB-UMIE/BDBV2026-Epidemic_Dashboard Public

    Dashboard based on open access, public data related to the the 2026 Ebola Bundibugyo oubtreak

    HTML 12 5