Releases: ci-lab-cz/easydock
Releases · ci-lab-cz/easydock
Release list
v1.3.0
- add server-based docking (
--program server) supporting containerized deep-learning programs via a persistent JSON Lines protocol - add CarsiDock server integration (SMILES input, SDF output, RTMScore scoring)
- add Vina-GPU server integration (bundles Vina-GPU, QVina2-GPU, QVinaW-GPU in a single container)
- auto-build container launch commands from a bare .sif path or Docker image name; parent directories of config-referenced files are bound automatically
- auto-inject
--nv/--gpusall into both bare and full-form container commands when a GPU is detected vianvidia-smi - add Docker image support for containerized protonation tools (same interface as SIF containers)
- add
easydock_busttool for PoseBusters pose validation; pass/fail results stored in a bust table in the database - add
--bustflag to get_sdf_from_easydock to filter output by PoseBusters results - add
--debugflag toget_sdf_from_easydockto print the generated SQL query - implement automatic detection and interactive upgrade of databases created by older EasyDock versions
- implement support of singularity/apptainer containers incorporating protonation tools on Linux and MacOS
- integrate
uni-pkaprotonation as a pre-built container - integrate protein-ligand fingerprint detection for docking poses of ligands based on
ProLIF - add
env.ymlto make setup and installation easier - the console script
get_sdf_from_dock_dbwas renamed toget_sdf_from_easydock - documentation was created