Skip to content

Releases: ci-lab-cz/easydock

Release list

v1.3.0

Choose a tag to compare

@DrrDom DrrDom released this 09 May 07:47
  • add server-based docking (--program server) supporting containerized deep-learning programs via a persistent JSON Lines protocol
  • add CarsiDock server integration (SMILES input, SDF output, RTMScore scoring)
  • add Vina-GPU server integration (bundles Vina-GPU, QVina2-GPU, QVinaW-GPU in a single container)
  • auto-build container launch commands from a bare .sif path or Docker image name; parent directories of config-referenced files are bound automatically
  • auto-inject --nv / --gpus all into both bare and full-form container commands when a GPU is detected via nvidia-smi
  • add Docker image support for containerized protonation tools (same interface as SIF containers)
  • add easydock_bust tool for PoseBusters pose validation; pass/fail results stored in a bust table in the database
  • add --bust flag to get_sdf_from_easydock to filter output by PoseBusters results
  • add --debug flag to get_sdf_from_easydock to print the generated SQL query
  • implement automatic detection and interactive upgrade of databases created by older EasyDock versions
  • implement support of singularity/apptainer containers incorporating protonation tools on Linux and MacOS
  • integrate uni-pka protonation as a pre-built container
  • integrate protein-ligand fingerprint detection for docking poses of ligands based on ProLIF
  • add env.yml to make setup and installation easier
  • the console script get_sdf_from_dock_db was renamed to get_sdf_from_easydock
  • documentation was created