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running -l0 without Hi-C data not producing partially phased assemblies

Status: Open.

#951 In chhylp123/hifiasm;

· sjfleck opened on Aug 21, 2026

For data with quality scores below R10 but above R9, can it be adapted to the dynamic error correction of Hifiasm (ONT)?

Status: Open.

#950 In chhylp123/hifiasm;

· linyuiz opened on Aug 20, 2026

HiC phasing across assembly gaps

Status: Open.

#949 In chhylp123/hifiasm;

· diego-rt opened on Aug 19, 2026

Large difference on SUP and HAC assembly

Status: Open.

#948 In chhylp123/hifiasm;

· baozg opened on Aug 19, 2026

hifiasm hybrid v1 core dump combining UL and HiFi reads

Status: Open.

#947 In chhylp123/hifiasm;

· dbajpp0 opened on Aug 15, 2026

Technical Replicate Handling in Hi-C Data for Hifiasm Phased Genome Assembly

Status: Open.

#946 In chhylp123/hifiasm;

· samrudnick opened on Aug 14, 2026

--rl-cut also filters CCS HiFi reads in hybrid_v1 with --ont --hf

Status: Open.

#945 In chhylp123/hifiasm;

· hrluo93 opened on Aug 8, 2026

Assembly is interrupted after using --telo-m and --ul, only intermediate .bin files are generated without GFA output

Status: Open.

#944 In chhylp123/hifiasm;

· bjl111 opened on Aug 6, 2026

-ul option with non-ultra-long ONT reads

Status: Open.

#943 In chhylp123/hifiasm;

· cruzreyc opened on Aug 6, 2026

Which assembly should be used as a reference for population genomics: primary or haplotype-resolved assembly?

Status: Open.

#942 In chhylp123/hifiasm;

· hungweichen0327 opened on Aug 6, 2026

Please add options for contig filtering

Status: Open.

#941 In chhylp123/hifiasm;

· colindaven opened on Jul 30, 2026

Higher coverage of ultra-long ONT reads leads to more gaps in --ont mode assembly

Status: Open.

#940 In chhylp123/hifiasm;

· wlhCNU opened on Jul 30, 2026