0.14.3

Fixed the alternate analysis procedure

v0.14.2

Updated the 'alternate analysis' script.

v0.14.1

Bug fixes: reimplemented missing options

v0.14.0

Code refactoring to src/ layout and GUI implementation

v0.12.0

This is the last main release before code refactoring to implement the GUI

v0.10.1

While the 'oat' pipeline has undergone continuous development since its inception, this is the first designated release (well, pre-release). The pipeline should be fully functional, but please let me know if you encounter any errors or bugs.

The pipeline has the most incorporated features for SARS-CoV-2, but works well with other viruses if you install them properly as per the instructions in the README.md file.