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oatk outputs two chloroplast sequences for the same species

Status: Open.

#23 In c-zhou/oatk;

· MPNguyen2022 opened on Mar 5, 2026

Segmentation fault error (core dumped)

Status: Open.

#22 In c-zhou/oatk;

· chosenobih opened on Nov 14, 2025

What sequencing depth of data is appropriate for assembling mitochondrial genomes?

Status: Open.

#21 In c-zhou/oatk;

· liyhui123 opened on Sep 24, 2025

more detailed explanation about these syncasm options?

Status: Open.

#20 In c-zhou/oatk;

· goshng opened on Sep 19, 2025

Unable to extract chloroplast genome

Status: Open.

#19 In c-zhou/oatk;

· ananyaverma opened on Sep 16, 2025

Why are the obtained organelle sequences identical?

Status: Open.

#17 In c-zhou/oatk;

· polchan opened on May 10, 2025

support ONT assembly

Status: Open.

#16 In c-zhou/oatk;

· hidtak opened on Mar 6, 2025

Using the parameter -m but obtaining the plastid genome

Status: Open.

#15 In c-zhou/oatk;

· zhouxp9709 opened on Dec 25, 2024

Input data type

Status: Open.

#14 In c-zhou/oatk;

· zzw-FL opened on Nov 27, 2024

oatk -c parameter

Status: Open.

#12 In c-zhou/oatk;

· smoothyly opened on Jun 2, 2024

paper publication

Status: Open.

#11 In c-zhou/oatk;

· mkim2003 opened on Mar 14, 2024

Question: how to validate oatk results?

Status: Open.

#10 In c-zhou/oatk;

· LiaOb21 opened on Feb 23, 2024