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TSPS-1127 make all disk sizes dynamic and set bootDiskSizeGb to 0 for all tasks - #1925

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TSPS-1127 make all disk sizes dynamic and set bootDiskSizeGb to 0 for all tasks#1925
jsotobroad wants to merge 4 commits into
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js_TSPS-1127

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@jsotobroad jsotobroad commented Aug 14, 2026

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Description

We want to make sure all of tasks have dynamic disk sizing

We also are testing whether we can set bootDiskSizeGb to 0.

Non call cached submission with these changes - https://app.terra.bio/#workspaces/allofus-drc-imputation/aou_sv_imputation_tsps_testing/submission_history/a37941e9-eb48-4ab9-981a-9596f88b1565

jira ticket - https://broadworkbench.atlassian.net/browse/TSPS-1127


Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP team by tagging @broadinstitute/warp-admins in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

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@jsotobroad jsotobroad changed the title TSPS 11-27 make all disk sizes dynamic and set bootDiskSizeGb to 0 for all tasks TSPS-1127 make all disk sizes dynamic and set bootDiskSizeGb to 0 for all tasks Aug 14, 2026
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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

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🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Glimpse2SVImputationBatch.changelog.md has not been changed and needs to be updated
MultilevelHierarchicallyPasteVcfsStreaming.changelog.md has not been changed and needs to be updated
PreprocessPLsGVCF.changelog.md has not been changed and needs to be updated
Glimpse2SVImputation.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

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Remember to squash merge!

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🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Glimpse2SVImputationBatch.changelog.md has not been changed and needs to be updated
MultilevelHierarchicallyPasteVcfsStreaming.changelog.md has not been changed and needs to be updated
PreprocessPLsGVCF.changelog.md has not been changed and needs to be updated
Glimpse2SVImputation.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions

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Remember to squash merge!

@github-actions

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions

Copy link
Copy Markdown

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions

Copy link
Copy Markdown

Remember to squash merge!

@github-actions

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions

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🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

}

Int disk_size_gb = ceil(size(input_vcf, "GiB") + size(panel_split_chunk_bin, "GiB") + size(genetic_map, "GiB") + 30)
Int disk_size_gb = ceil(size(input_vcf, "GiB") + size(panel_split_chunk_bin, "GiB") + size(genetic_map, "GiB") + 40)

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this change was to help with the batch size testing, this will need to change when we scale test as well so just tryign to help with that now

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2 participants