fix: replaces multi-option placeholders with function equivalents - #1812
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claymcleod wants to merge 2 commits into
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fix: replaces multi-option placeholders with function equivalents#1812claymcleod wants to merge 2 commits into
claymcleod wants to merge 2 commits into
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Placeholders in WDL cannot contain more than one option (e.g., `default` + `sep` or `true`/`false` paired with a second `default` + `sep` placeholder). This rewrites those expressions using `prefix()`, `sep()`, and `select_first()` to satisfy `sprocket lint` while preserving the original command-line output.
claymcleod
marked this pull request as ready for review
April 11, 2026 14:59
This was referenced Apr 11, 2026
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@claymcleod Thanks so much for this contribution and highlighting the syntax issue here. Unfortunately, we do not yet have tests for any of the AoU pipelines and cannot change them at this time. We will keep this open to revisit in the future. |
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Continuing the
sprocket lintcleanup, this fixes the cases where multiple placeholder options were combined in a single expression (e.g.,default+sep, or atrue/falseguard paired with adefault+sepplaceholder on the same variable). These are replaced with the equivalentprefix(),sep(), andselect_first()function calls.Depends on #1811.