Deprecate `get_most_severe_consequence_for_summary` in favor of more flexible `get_most_severe_csq_from_multiple_csq_lists` - #714

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jkgoodrich wants to merge 38 commits into

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jg/deprecate_get_most_severe_consequence_for_summary

Commits on Jun 12, 2024

Commits on Jun 13, 2024

Add prioritize_loftee_no_flags to get_most_severe_csq_from_multiple_csq_lists and make use of it in process_consequences
jkgoodrich
committed
c612203
Add tests for vep functions used in this PR
jkgoodrich
committed
059b012

Commits on Jun 14, 2024

Merge branch 'main' of https://github.com/broadinstitute/gnomad_methods into jg/fix_process_consequences
jkgoodrich
committed
e899b51

Commits on Jun 25, 2024

Commits on Oct 18, 2024

Merge branch 'main' of https://github.com/broadinstitute/gnomad_methods into jg/deprecate_get_most_severe_consequence_for_summary
jkgoodrich
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a46d11e

Commits on Oct 22, 2024

Address reviewer comments
jkgoodrich
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a67df82
format
jkgoodrich
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aa9df9a
Small docstring change
jkgoodrich
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5ecdeac
Add check for is_tc
jkgoodrich
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e1c9ef7
Change docstring default to correct value
jkgoodrich
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fbda89b
Change to get around pylint error
jkgoodrich
committed
8ab6fb4

Commits on Oct 24, 2024