Issues

• Interpreting abundance from strainGR & strainGST

  broadinstitute/StrainGE#44 · Filter by author topfm opened on May 22, 2025

• Guidance on Transitioning to datasets for Genome Downloads

  broadinstitute/StrainGE#42 · Filter by author liatbi opened on Nov 24, 2024
  2

• Running StrainGR call with refs_concat.fasta results TypeError: 'NoneType' object is not subscriptable

  broadinstitute/StrainGE#40 · Filter by author sjmiller-sahmri opened on Aug 26, 2024
  1

• 'VariantCallData' object has no attribute 'bad_read'

  broadinstitute/StrainGE#39 · Filter by author sconlan opened on Feb 29, 2024

• StrainGR identifies SNVs in samples where StrainGST did not detect a strain

  broadinstitute/StrainGE#36 · Filter by author kebow opened on Jan 10, 2024

• Installation error with incompatible scipy version

  broadinstitute/StrainGE#34 · Filter by author parul-sharma opened on Sep 27, 2023
  1

• ValueError: cannot set null allele

  broadinstitute/StrainGE#32 · Filter by author wwood opened on Apr 24, 2023

• cannot convert float NaN to integer

  broadinstitute/StrainGE#31 · Filter by author nick-youngblut opened on Apr 11, 2023
  2

• Preparing a DB for StrainGR

  broadinstitute/StrainGE#29 · Filter by author wwood opened on Apr 4, 2023

• How do you define the unique reads

  broadinstitute/StrainGE#28 · Filter by author StickHu opened on Mar 30, 2023

• Installation instructions do not work with micromamba

  broadinstitute/StrainGE#25 · Filter by author tstraub89 opened on Feb 7, 2023
  1

• straingr compare all vs all deon't create output file.

  broadinstitute/StrainGE#21 · Filter by author SilasK opened on Nov 10, 2022
  1

• prepare-ref looks for metadata file inside fasta file repository, with no option to parametrise this

  broadinstitute/StrainGE#19 · Filter by author SilasK opened on Nov 8, 2022
  1

• Change path template

  broadinstitute/StrainGE#16 · Filter by author Ahmedbargheet opened on Jun 22, 2022

• prepare_strainge_db.py

  broadinstitute/StrainGE#4 · Filter by author nick-youngblut opened on Mar 16, 2022
  3