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Association kg #75

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731ef84
association/qualifiers in meta knowledge graph
rjawesome Apr 5, 2023
0726f1c
association id optional
rjawesome Apr 5, 2023
f95b5ad
move association to its own branch
rjawesome Apr 12, 2023
0468697
support association being supplied
rjawesome Apr 12, 2023
cd2692f
change associatino name in x-bte
rjawesome Apr 12, 2023
867987a
fix types
rjawesome Apr 12, 2023
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4 changes: 3 additions & 1 deletion src/operations_builder/async_operations_builder_with_reasoner.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -67,9 +67,11 @@ export default class AsyncOperationsBuilderWithReasoner extends AsyncOperationsB
association: {
input_type: this.removeBioLinkPrefix(sbj),
output_type: this.removeBioLinkPrefix(obj),
predicate: this.removeBioLinkPrefix(pred),
predicate: this.removeBioLinkPrefix(typeof(pred) === "string" ? pred : pred.predicate),
api_name: metadata.title,
smartapi: metadata.smartapi,
association_id: typeof(pred) === "string" ? undefined : pred.association_id,
qualifiers: typeof(pred) === "string" ? undefined : pred.qualifiers,
"x-translator": metadata["x-translator"],
},
tags: [...metadata.tags, ...["bte-trapi"]],
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4 changes: 3 additions & 1 deletion src/operations_builder/sync_operations_builder_with_reasoner.ts
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Expand Up @@ -48,9 +48,11 @@ export default class SyncOperationsBuilderWithReasoner extends BaseOperationsBui
input_id: metadata?.nodes?.[sbj]?.id_prefixes,
output_type: this.removeBioLinkPrefix(obj),
output_id: metadata?.nodes?.[obj]?.id_prefixes,
predicate: this.removeBioLinkPrefix(pred),
predicate: this.removeBioLinkPrefix(typeof(pred) === "string" ? pred : pred.predicate),
api_name: metadata.association.api_name,
smartapi: metadata.association.smartapi,
association_id: typeof(pred) === "string" ? undefined : pred.association_id,
qualifiers: typeof(pred) === "string" ? undefined : pred.qualifiers,
"x-translator": metadata.association["x-translator"],
"x-trapi": metadata.association["x-trapi"],
},
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1 change: 1 addition & 0 deletions src/parser/endpoint.ts
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Expand Up @@ -84,6 +84,7 @@ export default class Endpoint {
output_id: this.removeBioLinkPrefix(output.id),
output_type: this.removeBioLinkPrefix(output.semantic),
predicate: this.removeBioLinkPrefix(op.predicate),
association_id: this.removeBioLinkPrefix(op.biolink_association_type),
qualifiers: op.qualifiers
? Object.fromEntries(
Object.entries(op.qualifiers).map(([qualifierType, qualifier]) => [
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2 changes: 2 additions & 0 deletions src/parser/types.ts
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Expand Up @@ -111,6 +111,7 @@ export interface XBTEKGSOperationObject {
inputs: XBTEKGSOperationBioEntityObject[];
outputs: XBTEKGSOperationBioEntityObject[];
predicate: string;
biolink_association_type?: string;
qualifiers?: { [qualifierType: string]: string; };
source?: string;
parameters?: XBTEParametersObject;
Expand Down Expand Up @@ -158,6 +159,7 @@ interface KGAssociationObject {
api_name?: string;
component?: string;
smartapi?: SmartAPIRegistryRecordObject;
association_id?: string;
"x-translator"?: any;
"x-trapi"?: XTRAPIObject;
qualifiers?: {
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3 changes: 2 additions & 1 deletion src/types.ts
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Expand Up @@ -37,6 +37,7 @@ interface PredicatesQueryOperationInterface {
interface PredicatesAssociationInterface {
api_name: string;
smartapi: SmartAPIRegistryRecordObject;
association_id?: string;
"x-translator": any;
"x-trapi"?: XTRAPIObject;
}
Expand All @@ -58,7 +59,7 @@ interface PredicatesNode {
}

interface ReasonerSubjectAndPredicate {
[propName: string]: string[];
[propName: string]: any[];
}

export interface ReasonerPredicatesResponse {
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