Issues

• [Simulation capabilities]: COBRApy

  Additional simulation capabilities
  biosimulators/Biosimulators#722 · Filter by author eagmon opened on Apr 2, 2026

• Smoldyn wrapper

  Additional simulation capabilities
  biosimulators/Biosimulators#721 · Filter by author eagmon opened on Apr 2, 2026

• Submit Smoldyn 2.74

  InvalidValidate/submit simulator
  biosimulators/Biosimulators#713 · Filter by author ssandrews opened on Jan 22, 2025
  7

• Submit MASSpy 0.1.6

  InvalidValidate/submit simulator
  biosimulators/Biosimulators#704 · Filter by author biosimulators-daemon opened on Oct 24, 2024
  6

• When a simulation is running on run.biosimulations.org, the web site claims constant failures

  biosimulators/Biosimulators#697 · Filter by author luciansmith opened on Sep 23, 2024
  2

  

• Test VCell 7.5.0.127

  ApprovedValidate/submit simulatorValidated
  biosimulators/Biosimulators#694 · Filter by author CodeByDrescher opened on Sep 1, 2024
  51

• [Simulation capabilities]: New Smoldyn version

  InvalidValidate/submit simulator
  biosimulators/Biosimulators#670 · Filter by author ssandrews opened on Feb 25, 2024
  4

• [Bug]: plotly display for biomodels 532 is incorrect

  bug
  biosimulators/Biosimulators#644 · Filter by author luciansmith opened on Jul 27, 2023
  

• Simulator upload timeout for https://api.biosimulations.org/images/refresh

  bug
  biosimulators/Biosimulators#624 · Filter by author luciansmith opened on Apr 27, 2023
  2

• Don't use pip inside setup.py

  bug
  biosimulators/Biosimulators#611 · Filter by author luciansmith opened on Apr 18, 2023
  1

• Post Singularity images to GitHub container registry

  future
  biosimulators/Biosimulators#457 · Filter by author jonrkarr opened on Oct 28, 2021

• Dependency Dashboard

  biosimulators/Biosimulators#357 · Filter by author renovate opened on Aug 30, 2021

• Address clash between NEURON and PySCeS

  bug in dependency
  biosimulators/Biosimulators#353 · Filter by author jonrkarr opened on Aug 27, 2021
  1

• Expand capabilities of NEURON interface to native NEURON model format

  Additional simulation capabilities
  biosimulators/Biosimulators#289 · Filter by author jonrkarr opened on Jul 20, 2021

• Submit containers to broader Docker image registries

  future
  biosimulators/Biosimulators#381 · Filter by author jonrkarr opened on Jan 13, 2021
  2

• Expand simulators to other domains

  Additional simulation capabilitiesfuture
  biosimulators/Biosimulators#92 · Filter by author jonrkarr opened on Jan 7, 2021