Add 240 automated E. coli SDRF annotations (batch 2)

[ypriverol]

E. coli SDRF annotations — automated batch 2 (240 datasets)

240 additional single-organism Escherichia coli ProteomeXchange datasets, not
previously annotated here or in quantms-datasets. Same method as batch 1:

• Metadata drafted from each project's PRIDE record + submitter protocols.
• characteristics[organism] grounded to PRIDE's declared organism (a common
  first-pass error was a hallucinated Homo sapiens, corrected across the batch).
• Controlled-vocabulary values (instrument, label, cleavage agent, dissociation,
  acquisition) resolved to PSI-MS accessions against the OLS cache; common
  abbreviations (e.g. Gluc, LysC) normalized to canonical terms; unverifiable
  accessions reduced to NT= only.
• All files pass parse_sdrf validate-sdrf -t ms-proteomics.

First-pass automated annotations — review welcome. Empirical instrument / mass
tolerance verification from the raw spectra, and multi-organism E. coli datasets,
are planned follow-ups.

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[coderabbitai]

Important

Review skipped

Review was skipped due to path filters

⛔ Files ignored due to path filters (240)

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