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docs: add Zenodo DOI (10.5281/zenodo.19740405)
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#273:
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Merge pull request #96 from berntpopp/chore/add-citation-cff
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chore: add CITATION.cff for repository citation support
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chore: bump version to 0.44.4
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Merge pull request #95 from berntpopp/fix/ont-default-hq-model
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#269:
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fix: default ONT model to QSHMM-ONT-HQ (high-quality)
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#268:
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chore: bump version to 0.44.3
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Merge pull request #94 from berntpopp/fix/79-ont-model-config
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fix: ONT amplicon pipeline uses dedicated ont_amplicon_params config (#79)
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fix: ONT amplicon pipeline uses dedicated ont_amplicon_params config (#79)
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fix: ONT amplicon pipeline uses dedicated ont_amplicon_params config (#79)
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fix: ONT amplicon pipeline uses dedicated ont_amplicon_params config (#79)
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Merge pull request #93 from berntpopp/fix/92-copilot-feedback
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fix: address Copilot review, bump to v0.44.3
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Merge pull request #92 from berntpopp/fix/91-amplicon-lower-bound
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fix: lower amplicon product range minimum from 1500bp to 500bp
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chore: bump version to 0.44.2
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fix: sync version.py to 0.44.1
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Merge pull request #90 from berntpopp/fix/89-vntr-downsample-two-step
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#255:
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fix: two-step VNTR downsampling to match real exome coverage profiles
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fix: two-step VNTR downsampling to match real exome coverage profiles
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fix: downsample_bam() was dropping all non-VNTR reads (#89)
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chore: archive completed plans and specs
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chore: bump version to 0.44.0
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#250:
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Merge pull request #87 from berntpopp/fix/85-86-vntr-coverage-penalty
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