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1. scATAcat scATAcat Public

   scATAcat: scATAC-seq cluster annotation tool

   Jupyter Notebook 4

2. BMP9_FSS_ATAC_analysis BMP9_FSS_ATAC_analysis Public

   Code used in the data analysis of " BMP9 and Fluid Shear Stress regulate endothelial chromatin accessibility and expression of SMAD low affinity target genes"

   Jupyter Notebook 1 2

3. scATAcat_paper scATAcat_paper Public

   Scripts and notebooks used in the scATAcat paper

   Jupyter Notebook 1

4. CRUP CRUP Public

   CRUP collapses different layers of epigenetic information into a single list of regulatory units consisting of dynamically changing enhancers and target genes.

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5. single-cell-tutorial single-cell-tutorial Public

   Forked from theislab/single-cell-tutorial

   Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

   Jupyter Notebook

6. DeepLearningTutorial DeepLearningTutorial Public

   Forked from RaikOtto/DeepLearningTutorial

   Deep Learning Tutorial for the Social Bioinformatics Workshop

   Jupyter Notebook 1