tbAnnotator/template.html at master · avkitex/tbAnnotator · GitHub

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<!DOCTYPE html>
<html>
   <head>
      <style>
			<title>VCF Analysis Report $filename </title>
		 <meta http-equiv="content-type" content="text/html; charset=windows-1251">
				<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
		 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/css/bootstrap.min.css" integrity="sha384-1q8mTJOASx8j1Au+a5WDVnPi2lkFfwwEAa8hDDdjZlpLegxhjVME1fgjWPGmkzs7" crossorigin="anonymous">
		 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/css/bootstrap-theme.min.css" integrity="sha384-fLW2N01lMqjakBkx3l/M9EahuwpSfeNvV63J5ezn3uZzapT0u7EYsXMjQV+0En5r" crossorigin="anonymous">
		 <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/js/bootstrap.min.js" integrity="sha384-0mSbJDEHialfmuBBQP6A4Qrprq5OVfW37PRR3j5ELqxss1yVqOtnepnHVP9aJ7xS" crossorigin="anonymous"></script>
		 <style type="text/css">
		 		html, body{
					width:100%;
				}
		 		#mainTable, #header{
					border: 1px solid black;
					width:90%;
					margin: 0 auto 10px;
				}
				#suggestTable{
					width:400px;
					border: 1px solid black;
					margin: 0 auto 10px;
				}
			 .notinhibitor{
				 border:2px solid red;
			 }
			 .inhibitor{
				 border:2px solid green;
			 }
			 .red{
				 background-color:rgba(255,0,0,0.65);
			 }
			 .orange{
				 background-color:rgba(255,222,0,0.65);
					}
				.yellow{
					background-color:rgba(255,255,50,0.65);
				}
				.green{
					background-color: #78AB46;
				}
				.mainHeader{
					font-size: 30px;
					font-weight: bold;
				}
				.tHeader{
					font-size: 25px;
					text-indent: 30px;
				}
         body{
         	background: #fff;
         }
				 #suggestTable td{
					 min-height:40px;

				 }
				 .table{
					 font-size: 18px;
				 }
      </style>
   </head>
	 <body>
	   <div id = "container">

		 	<div id = "header"><div class="page-header">
		     <p class = 'mainHeader'>VCF Analysis Report</p>
		     $filename
		   </div> </div>

	 <div id = "main">

		 <p class = "tHeader">Drugs suggested for treatment</p>
		 <table class = "table" id="suggestTable">
			 <thead>
			 <tr>
				 <td>Drug</td>
				 <td>Resistance</td>
			 </tr>
			 </thead>
			 #for $drug in $drugsList:
				 #if drug['resistanceScore'] < 0.5
				 <tr class="green">
				 #elif drug['resistanceScore'] < 15
				 <tr class="yellow">
				 #else:
				 <tr class="red">
				 #end if
				 <td>${drug['drug']}</td>
				 <td>
					 ${round(drug['resistanceScore'],1)}
				 </td>
			 </tr>
			 #end for
		 </table>
		 <p class = "tHeader">SNPs in details</p>
	  <table class="table" id = "mainTable">
	   <tr>
	     <th colspan="5" style="width:40%;">SNP</th>
	     <th rowspan="2">Resistant Drug:Score</th>
	 	  <th rowspan="2">SIFT prediction</th>
	     <th rowspan="2">PubMed ID</th>

	   </tr>

	   <tr>
	   <th id="snp">ID </th>
	 	<th id="snp">Position</th>
	 	<th id="snp">Ref Allele</th>
	 	<th id="snp">Alt Allele</th>
	 	<th id="snp">Gene</th>
	   </tr>

	 #for $snp in range(len($data))
	   #if $data[$snp]['evidence'] == 3
	   <tr class="red">
	   #elif $data[$snp]['evidence'] == 2
	   <tr class="orange">
	   #elif $data[$snp]['evidence'] == 1
	   <tr class="yellow">
	   #else
	   <tr>
	   #end if
	   <td>${snp + 1}</td>
	   <td>$data[$snp]['position']</td>
	   <td>$data[$snp]['refNucl']</td>
	   <td>$data[$snp]['altNucl']</td>
	   <td>$data[$snp]['geneId']</td>
	   <td>
	     #for drug in $data[$snp]['drugs']
	       ${drug['drug']}:${round(drug['score'], 1)}
	       <br/>
	     #end for


	   </td>
	   <td>$data[$snp]['siftPred']</td>
	   <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/${data[$snp]['pubmed']}"> $data[$snp]['pubmed']</a></td>
	 </tr>
	 #end for

	 </table>
	 	 	</div>
 	 	 </div>
	</body>
</html>