Dev4.1 new chain#34

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apfeffer wants to merge 312 commits into

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charles-river-analytics:Dev4.1-NewChain

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Commits on Jul 8, 2015

Add DataReduction methods to reduce distribution
gtakata
committed
Merge pull request #495 from gtakata/DEV3.2.1.1
mreposa
committed
Merge pull request #496 from p2t2/DEV3.2.1.1
mreposa
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Merge 3.2.1.1 with 3.3
Mike Reposa
committed
Merge branch 'DEV3.2.1.1' into DEV3.3
Mike Reposa
committed
Merge 3.3 into 4.0
Mike Reposa
committed
Merge 3.3 into 4.0
Mike Reposa
committed
ScalaDoc fixes
Mike Reposa
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Add file headers.
lfkellogg
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Merge pull request #499 from lfkellogg/DEV3.3
mreposa
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More ScalaDoc fixes
Mike Reposa
committed

Commits on Jul 9, 2015

Commits on Jul 10, 2015

Fixes to VE recursion. Moved test into VETest, made shorter.
bruttenberg
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Reverted back to tail calls
bruttenberg
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Version update
Mike Reposa
committed
Merge pull request #503 from bruttenberg/DEV3.3
mreposa
committed

Commits on Jul 13, 2015

Added InternalChainVariable
wkretschmer
committed
Fixes for two small bugs. ElementSampler was wiping temporary elements
bruttenberg
committed

Commits on Jul 14, 2015

Merge pull request #504 from bruttenberg/DEV3.3
mreposa
committed
Merge pull request #505 from p2t2/DEV3.3
mreposa
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Update version
Mike Reposa
committed
Internal variable improvement
wkretschmer
committed
Merge remote-tracking branch 'upstream/DEV4.0' into DEV4.0
wkretschmer
committed

Commits on Jul 16, 2015

More changes to Chain variables for Gibbs sampling
wkretschmer
committed
Initial Gibbs sampling implementation
wkretschmer
committed

Commits on Jul 20, 2015

Changed names of StructuredSolver to StructuredStrategy to reflect that
bruttenberg
committed

Commits on Jul 21, 2015

Broke down strategy into decompose strategies and solving strategies.
bruttenberg
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Added headers, started added tests
bruttenberg
committed

Commits on Jul 22, 2015

Minor fixes to the raising code and tests
bruttenberg
committed
Fix broken links
Mike Reposa
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Fix broken links
Mike Reposa
committed
Merge branch 'DEV4.0' of http://github.com/p2t2/figaro into DEV4.0
Mike Reposa
committed
Fix broken links
Mike Reposa
committed

Commits on Jul 24, 2015

Merge pull request #508 from p2t2/DEV3.3
mreposa
committed

Commits on Jul 27, 2015

Gibbs sampling improvements
wkretschmer
committed

Commits on Aug 5, 2015

Block sampling improvements
wkretschmer
committed
Gibbs cleanup
wkretschmer
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Forward sampling in WalkSAT
wkretschmer
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Gibbs sampling tests
wkretschmer
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Commits on Aug 6, 2015

Merge remote-tracking branch 'upstream/DEV4.0' into DEV4.0
wkretschmer
committed
Repeated variables fix for Gibbs sampling
wkretschmer
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Additional Gibbs sampling tests
wkretschmer
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Commits on Aug 7, 2015

Commits on Aug 24, 2015

Unified Chain factor creation
wkretschmer
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Gibbs sampling in SFI
wkretschmer
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Initial test for Gibbs sampling in SFI
wkretschmer
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Ising model example using Gibbs/SFI
wkretschmer
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Commits on Aug 26, 2015

GibbsSolver normalizes at the end of sampling
wkretschmer
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More tests for Gibbs in SFI
wkretschmer
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Merge pull request #515 from wkretschmer/DEV4.0
mreposa
committed

Commits on Sep 3, 2015

Removed IsingModel from examples
bruttenberg
committed
Merge pull request #517 from bruttenberg/DEV4.0
mreposa
committed

Commits on Sep 21, 2015

Commits on Sep 22, 2015

Commits on Sep 25, 2015

Merge pull request #522 from p2t2/DEV3.3.0.1
mreposa
committed

Commits on Sep 30, 2015

Commits on Oct 13, 2015

New Quick Start Guide
Michael Reposa
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Merge branch 'DEV4.0' of https://github.com/p2t2/figaro into DEV4.0
Michael Reposa
committed

Commits on Oct 28, 2015

Major changes to SFI code. Added new raising strategy.
bruttenberg
committed

Commits on Oct 30, 2015

More changes to SFI. Fix for issue #528. Note there are still many tests
bruttenberg
committed

Commits on Nov 5, 2015

Changes to Gibbs sampling to use SFI data structures when running in SFI
bruttenberg
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Commits on Nov 12, 2015

Merge pull request #530 from bruttenberg/DEV4.0
mreposa
committed

Commits on Nov 16, 2015

Changes for switching factor creation over to SFI factor creation
bruttenberg
committed

Commits on Nov 30, 2015

Merge remote-tracking branch 'upstream/DEV4.0' into DEV4.0
bruttenberg
committed

Commits on Dec 1, 2015

Commits on Dec 2, 2015

Make FigaroExamples use \lib_managed
Michael Reposa
committed

Commits on Dec 7, 2015

Update of Figaro dependencies
Michael Reposa
committed

Commits on Dec 8, 2015

Merge remote-tracking branch 'upstream/DEV4.0' into DEV4.0
bruttenberg
committed

Commits on Dec 15, 2015

More changes to factor code. Sufficient statistics factors now use the
bruttenberg
committed

Commits on Dec 18, 2015

More changes to factors. Everything but lazy inference uses the new
bruttenberg
committed

Commits on Dec 21, 2015

Small fix to WalkSAT test
bruttenberg
committed
Fixed compile errors
bruttenberg
committed

Commits on Dec 22, 2015

Merge pull request #535 from bruttenberg/DEV4.0
mreposa
committed
Fix and test for issue #537.
bruttenberg
committed

Commits on Dec 30, 2015

SFI and Gibbs sampling moved out of experimental and into the main code
bruttenberg
committed
Minor fixes
bruttenberg
committed

Commits on Dec 31, 2015

Merge pull request #539 from bruttenberg/DEV4.0
mreposa
committed
Roll back to assembly v0.11.2
Michael Reposa
committed

Commits on Jan 7, 2016

Initial updates for 4.0 release
Michael Reposa
committed

Commits on Jan 21, 2016

Minor edits
Michael Reposa
committed

Commits on Feb 3, 2016

Fix for issue #541
bruttenberg
committed
Merge pull request #546 from bruttenberg/DEV4.0
mreposa
committed

Commits on Feb 4, 2016

Updates related to source file header check
Michael Reposa
committed
Merge branch 'DEV4.0' of https://github.com/p2t2/figaro into DEV4.0
Michael Reposa
committed

Commits on Feb 5, 2016

Partial fix for issue #540
bruttenberg
committed
Merge pull request #547 from bruttenberg/DEV4.0
mreposa
committed

Commits on Feb 23, 2016

Minor updates, and final fixes for issue #540
bruttenberg
committed
Small changes
bruttenberg
committed
Merge pull request #549 from bruttenberg/DEV4.0
mreposa
committed

Commits on Feb 25, 2016

Remove references to Figaro package values
mhoward2718
committed
Merge pull request #550 from mhoward2718/DEV4.0
mreposa
committed

Commits on Mar 3, 2016

Added book examples as unit tests
Michael Reposa
committed

Commits on Mar 8, 2016

Added factor maker back into Factory.
bruttenberg
committed
Merge remote-tracking branch 'upstream/DEV4.0' into DEV4.0
bruttenberg
committed
Added struct alg back
bruttenberg
committed
Added header on structured
bruttenberg
committed
Merge pull request #552 from bruttenberg/DEV4.0
mreposa
committed
Tutorial updates
bruttenberg
committed
Merge pull request #553 from bruttenberg/DEV4.0
mreposa
committed
Updates to unit test and tutorial
Michael Reposa
committed

Commits on Mar 10, 2016

More updates to book unit tests
Michael Reposa
committed

Commits on Mar 11, 2016

Fixes to unit test
Michael Reposa
committed
Updated Release Notes for 4.0
Michael Reposa
committed

Commits on Mar 14, 2016

Merge pull request #555 from p2t2/DEV4.0
mreposa
committed
Updates for next release
Michael Reposa
committed

Commits on Mar 31, 2016

Commits on Apr 1, 2016

Added MPE BP for SFI and BP cleanup.
bruttenberg
committed
Fixed failing SFI BP test
bruttenberg
committed
Merge pull request #566 from bruttenberg/DEV4.1
mreposa
committed

Commits on Apr 14, 2016

Commits on Apr 29, 2016

Removed private on SFI solvers
bruttenberg
committed
Merge pull request #572 from bruttenberg/DEV4.1
mreposa
committed

Commits on May 5, 2016

Commits on May 18, 2016

Minor changes to Gibbs for optimization
bruttenberg
committed
Merge pull request #576 from bruttenberg/DEV4.1
mreposa
committed

Commits on May 20, 2016

Commits on May 25, 2016

Removing TrainableModel trait and updating example accordingly
Dan Garant
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Commits on May 27, 2016

Adding univariate kernel density estimator element and test
Dan Garant
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Commits on May 30, 2016

Tries solving #583.
csenol
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Commits on Jun 1, 2016

Commits on Jun 6, 2016

Removed semiring from Marginal MAP algorithms
wkretschmer
committed

Commits on Jun 9, 2016

Commits on Jun 10, 2016

Cleaned up marginal MAP interface
wkretschmer
committed

Commits on Jun 13, 2016

Cleaned up Marginal MAP VE
wkretschmer
committed

Commits on Jun 15, 2016

Marginal MAP BP
wkretschmer
committed

Commits on Jun 24, 2016

Merge branch 'curry-support-to-apply' of https://github.com/csenol/figaro into csenol-curry-support-to-apply
Michael Reposa
committed
Merge branch 'csenol-curry-support-to-apply' into DEV4.1
Michael Reposa
committed

Commits on Jun 27, 2016

Anytime marginal MAP
wkretschmer
committed

Commits on Jun 28, 2016

Commits on Jul 3, 2016

Commits on Jul 13, 2016

Revert tests to verify backward compatibility
csenol
committed

Commits on Jul 14, 2016

Commits on Jul 16, 2016

Make expectation functions curried for type inference
csenol
committed

Commits on Jul 19, 2016

Adding function to deregister dependencies in LikelihoodWeighter, and
Aaron Zakem
committed

Commits on Jul 26, 2016

Doc update
Michael Reposa
committed

Commits on Jul 28, 2016

Commits on Jul 29, 2016

Commits on Aug 5, 2016

Commits on Aug 9, 2016

Fixed deactivation bug in ProbEvidenceMarginalMAP
wkretschmer
committed

Commits on Aug 15, 2016

Commits on Aug 16, 2016

Commits on Aug 18, 2016

Normal proposals for univariate continuous elements
wkretschmer
committed

Commits on Aug 22, 2016

Commits on Aug 23, 2016

Commits on Aug 24, 2016

Commits on Aug 25, 2016

Commits on Aug 26, 2016

Commits on Sep 22, 2016

Merge pull request #617 from wkretschmer/DEV4.1
mreposa
authored

Commits on Nov 30, 2016

Added license info to QSG; updated .gitignore to ignore IntelliJ work dir
Michael Reposa
committed

Commits on Dec 2, 2016

New chain factor construction
apfeffer
committed

Commits on Dec 15, 2016

Commits on Dec 16, 2016

Changed warning in particle generator to be more informative when
bruttenberg
committed

Commits on Dec 19, 2016

Added ValueMaker back into Range for factor creation. This also
bruttenberg
committed

Commits on Dec 21, 2016

Several changes:
bruttenberg
committed

Commits on Dec 28, 2016

Merge pull request #653 from bruttenberg/Dev4.1-NewChain
mreposa
authored

Commits on Jan 10, 2017

Commits on Jan 13, 2017

Updated release notes
Michael Reposa
committed