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amino_acids
amino_acids
 
 
databases
databases
 
 
lib
lib
 
 
rotamer_library
rotamer_library
 
 
test
test
 
 
tinker_jobs
tinker_jobs
 
 
AbstractTorsion.java
AbstractTorsion.java
 
 
AminoAcid.java
AminoAcid.java
 
 
Atom.java
Atom.java
 
 
BackboneFingerprint.java
BackboneFingerprint.java
 
 
BackboneMutator.java
BackboneMutator.java
 
 
BetaSheetGenerator.java
BetaSheetGenerator.java
 
 
Chirality.java
Chirality.java
 
 
DCLMAreaCalculator.java
DCLMAreaCalculator.java
 
 
DatabaseLoader.java
DatabaseLoader.java
 
 
DiscreteProbabilityDistribution.java
DiscreteProbabilityDistribution.java
 
 
Element.java
Element.java
 
 
EnergyBreakdown.java
EnergyBreakdown.java
 
 
FileFormat.java
FileFormat.java
 
 
FixedSequenceOPLScalculator.java
FixedSequenceOPLScalculator.java
 
 
Forcefield.java
Forcefield.java
 
 
FragmentGenerationOPLScalculator.java
FragmentGenerationOPLScalculator.java
 
 
GaussianInputFile.java
GaussianInputFile.java
 
 
GeneralThreadService.java
GeneralThreadService.java
 
 
HydrogenBondMutator.java
HydrogenBondMutator.java
 
 
Immutable.java
Immutable.java
 
 
IndexPair.java
IndexPair.java
 
 
IndexTorsion.java
IndexTorsion.java
 
 
InputFileFormat.java
InputFileFormat.java
 
 
Interaction.java
Interaction.java
 
 
Molecule.java
Molecule.java
 
 
MonteCarloJob.java
MonteCarloJob.java
 
 
MonteCarloResult.java
MonteCarloResult.java
 
 
Mutator.java
Mutator.java
 
 
NonRotamericLibrary.java
NonRotamericLibrary.java
 
 
OPLSforcefield.java
OPLSforcefield.java
 
 
OmegaDatabase.java
OmegaDatabase.java
 
 
OutputFileFormat.java
OutputFileFormat.java
 
 
Pair.java
Pair.java
 
 
Peptide.java
Peptide.java
 
 
PeptideFactory.java
PeptideFactory.java
 
 
ProtoAminoAcid.java
ProtoAminoAcid.java
 
 
ProtoAminoAcidDatabase.java
ProtoAminoAcidDatabase.java
 
 
ProtoAminoAcidFile.java
ProtoAminoAcidFile.java
 
 
ProtoTorsion.java
ProtoTorsion.java
 
 
RamachandranDatabase.java
RamachandranDatabase.java
 
 
RemoteResult.java
RemoteResult.java
 
 
RemoteWorkUnit.java
RemoteWorkUnit.java
 
 
Residue.java
Residue.java
 
 
Result.java
Result.java
 
 
Rotamer.java
Rotamer.java
 
 
RotamerDatabase.java
RotamerDatabase.java
 
 
RotamerFactory.java
RotamerFactory.java
 
 
RotamerLibrary.java
RotamerLibrary.java
 
 
RotamerMutator.java
RotamerMutator.java
 
 
RotamerPair.java
RotamerPair.java
 
 
RotamerSpace.java
RotamerSpace.java
 
 
RotamerSummarizer.java
RotamerSummarizer.java
 
 
RotamericLibrary.java
RotamericLibrary.java
 
 
Settings.java
Settings.java
 
 
ShrakeRupleyCalculator.java
ShrakeRupleyCalculator.java
 
 
SidechainMutator.java
SidechainMutator.java
 
 
Singleton.java
Singleton.java
 
 
Superposition.java
Superposition.java
 
 
SurfaceAreaCalculator.java
SurfaceAreaCalculator.java
 
 
TinkerAnalysisJob.java
TinkerAnalysisJob.java
 
 
TinkerAnalyzeOutputFile.java
TinkerAnalyzeOutputFile.java
 
 
TinkerJob.java
TinkerJob.java
 
 
TinkerKeyFile.java
TinkerKeyFile.java
 
 
TinkerMinimizationJob.java
TinkerMinimizationJob.java
 
 
TinkerXYZInputFile.java
TinkerXYZInputFile.java
 
 
TinkerXYZOutputFile.java
TinkerXYZOutputFile.java
 
 
WorkUnit.java
WorkUnit.java
 
 
compile
compile
 
 
compile2
compile2
 
 

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A repository for solving the folding problem for microproteins

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