Datavis analysis - #17

Open

A-Jolly-Holly wants to merge 36 commits into

mainfrom

datavis_analysis

Commits on Aug 21, 2026

restructuing umap viewer with backend, GCS file support, docker setup
A-Jolly-Holly
committed
cef3533

Commits on Aug 22, 2026

Gene reads from gexp layer / CSC stores; optional second store for rapids

A-Jolly-Holly
and
claude
committed
459dd81
Cache opened zarr arrays in the gene reader

A-Jolly-Holly
and
claude
committed
282ad10
Two-store routing: coords/obs/views from RAPIDS_DIR; streaming tested + reverted

A-Jolly-Holly
and
claude
committed
2970eae
Display raw-count gene colors as log1p clipped at p99

A-Jolly-Holly
and
claude
committed
a6899d5
Revert "Display raw-count gene colors as log1p clipped at p99"
A-Jolly-Holly
committed
326118c
Warn (dtype check only) when gene colors come from raw counts

A-Jolly-Holly
and
claude
committed
c91c241

Commits on Aug 24, 2026

GPU pipeline loop: submit selection -> A100 rerun -> view returns to app

A-Jolly-Holly
and
claude
committed
4abf444
Faster GPU runs (96s -> 50s for small selections) + delete-view button

A-Jolly-Holly
and
claude
committed
e651fd2
Disable FastAPI docs/openapi routes

A-Jolly-Holly
and
claude
committed
f6c14ad
Warm GPU runner: 20s selection-to-view, reproducible bootstrap

A-Jolly-Holly
and
claude
committed
89666ff
Simplify: drop gpu_bootstrap, default GPU config to the datavis box

A-Jolly-Holly
and
claude
committed
844972b
GPU runs from docker: gcloud in the backend image, creds mounted

A-Jolly-Holly
and
claude
committed
952170c
Signpost the backend root to the app UI

A-Jolly-Holly
and
claude
committed
e8ff11d
Re-enable /docs as the API console

A-Jolly-Holly
and
claude
committed
ca9677f
Rename submit button to "GPU run"

A-Jolly-Holly
and
claude
committed
1c52450
Harden view delete + transient-error recovery

A-Jolly-Holly
and
claude
committed
ffed58a
Fast batched view delete + loading scrim, relocation, stale-view recovery

A-Jolly-Holly
and
claude
committed
203832f
GPU run polish: plain label, clear lasso on submit, no auto-jump to finished views

A-Jolly-Holly
and
claude
committed
96b1f00
Fit the viewer to the viewport: zero body margin, 100% sizing

A-Jolly-Holly
and
claude
committed
b529f87
Categorical color-by: auto-retry once, surface failures in the Legend

A-Jolly-Holly
and
claude
committed
43574db
Cold per-job GPU architecture on a single store; backend split into modules

A-Jolly-Holly
and
claude
committed
97bbc94

Commits on Aug 25, 2026

Commits on Aug 26, 2026

adding labeling to umap tool
A-Jolly-Holly
committed
a5fdd30
datavis directory resturcture, add labeling tool
A-Jolly-Holly
committed
edd10fb

Commits on Sep 1, 2026

UI updates to match other Allen data apps
A-Jolly-Holly
committed
9dd7f19

Commits on Sep 2, 2026