R

Straw is compatible with R via the Rcpp library. Usage is very similar to the examples on the C++ page. Future versions might use a different signature to call the function.

library(Rcpp)
sourceCpp("straw-R.cpp")
A<-straw_R("NONE drosophila.hic arm_2L arm_2L BP 100000")

In the above example, A is a data frame containing the counts information:

> head(A)
        x        y counts
1  800000  4700000     77
2       0        0  41105
3 5500000  8100000     82
4 2700000  8300000     85
5 5700000 17700000     11
6 3000000 16500000     27

Troubleshooting

Please see this forum post for a solution to a compilation error that some users have experienced.